Analysis of interatomic Contacts of Structural Units in PDB entry:
8B48


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8B48 entry

There are 4 chains in PDB entry 8B48 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 20LEU 389
B
 SER 20LEU 389
C
 SER 20LEU 389
D
 CYS 21LEU 389
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 72 helices in PDB entry 8B48. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
50 52Right-handed 310
Helix 2
AA2
A
53 69Right-handed alpha
Helix 3
AA3
A
139 144Right-handed alpha
Helix 4
AA4
A
152 159Right-handed alpha
Helix 5
AA5
A
165 184Right-handed alpha
Helix 6
AA6
A
185 187Right-handed 310
Helix 7
AA7
A
200 213Right-handed alpha
Helix 8
AA8
A
231 241Right-handed alpha
Helix 9
AA9
A
247 252Right-handed alpha
Helix 10
AB1
A
259 265Right-handed 310
Helix 11
AB2
A
268 272Right-handed 310
Helix 12
AB3
A
276 282Right-handed alpha
Helix 13
AB4
A
283 285Right-handed 310
Helix 14
AB5
A
298 301Right-handed 310
Helix 15
AB6
A
302 320Right-handed alpha
Helix 16
AB7
A
322 324Right-handed 310
Helix 17
AB8
A
340 342Right-handed 310
Helix 18
AB9
A
343 355Right-handed alpha
Helix 19
AC1
B
50 52Right-handed 310
Helix 20
AC2
B
53 69Right-handed alpha
Helix 21
AC3
B
139 144Right-handed alpha
Helix 22
AC4
B
152 159Right-handed alpha
Helix 23
AC5
B
165 184Right-handed alpha
Helix 24
AC6
B
185 187Right-handed 310
Helix 25
AC7
B
200 213Right-handed alpha
Helix 26
AC8
B
231 241Right-handed alpha
Helix 27
AC9
B
247 252Right-handed alpha
Helix 28
AD1
B
259 265Right-handed 310
Helix 29
AD2
B
268 272Right-handed 310
Helix 30
AD3
B
276 282Right-handed alpha
Helix 31
AD4
B
283 285Right-handed 310
Helix 32
AD5
B
298 301Right-handed 310
Helix 33
AD6
B
302 320Right-handed alpha
Helix 34
AD7
B
322 324Right-handed 310
Helix 35
AD8
B
340 342Right-handed 310
Helix 36
AD9
B
343 355Right-handed alpha
Helix 37
AE1
C
50 52Right-handed 310
Helix 38
AE2
C
53 69Right-handed alpha
Helix 39
AE3
C
139 144Right-handed alpha
Helix 40
AE4
C
152 159Right-handed alpha
Helix 41
AE5
C
165 184Right-handed alpha
Helix 42
AE6
C
185 187Right-handed 310
Helix 43
AE7
C
200 213Right-handed alpha
Helix 44
AE8
C
231 241Right-handed alpha
Helix 45
AE9
C
247 252Right-handed alpha
Helix 46
AF1
C
259 265Right-handed 310
Helix 47
AF2
C
268 272Right-handed 310
Helix 48
AF3
C
276 282Right-handed alpha
Helix 49
AF4
C
283 285Right-handed 310
Helix 50
AF5
C
298 301Right-handed 310
Helix 51
AF6
C
302 320Right-handed alpha
Helix 52
AF7
C
322 324Right-handed 310
Helix 53
AF8
C
340 342Right-handed 310
Helix 54
AF9
C
343 355Right-handed alpha
Helix 55
AG1
D
50 52Right-handed 310
Helix 56
AG2
D
53 69Right-handed alpha
Helix 57
AG3
D
139 144Right-handed alpha
Helix 58
AG4
D
152 159Right-handed alpha
Helix 59
AG5
D
165 184Right-handed alpha
Helix 60
AG6
D
185 187Right-handed 310
Helix 61
AG7
D
200 213Right-handed alpha
Helix 62
AG8
D
231 241Right-handed alpha
Helix 63
AG9
D
247 252Right-handed alpha
Helix 64
AH1
D
259 265Right-handed 310
Helix 65
AH2
D
268 272Right-handed 310
Helix 66
AH3
D
276 282Right-handed alpha
Helix 67
AH4
D
283 285Right-handed 310
Helix 68
AH5
D
298 301Right-handed 310
Helix 69
AH6
D
302 320Right-handed alpha
Helix 70
AH7
D
322 324Right-handed 310
Helix 71
AH8
D
340 342Right-handed 310
Helix 72
AH9
D
343 355Right-handed alpha
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There are 4 sheets in PDB entry 8B48. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 85first strand
Strand 2
A
88 95anti-parallel
Strand 3
A
98 107anti-parallel
Strand 4
A
134 138anti-parallel
Strand 5
A
116 122parallel
Strand 6
A
189 199parallel
Strand 7
A
218 222parallel
Strand 8
A
289 295parallel
Strand 9
A
326 331parallel
Strand 10
A
365 367parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
79 85first strand
Strand 2
B
88 95anti-parallel
Strand 3
B
98 107anti-parallel
Strand 4
B
134 138anti-parallel
Strand 5
B
116 122parallel
Strand 6
B
189 199parallel
Strand 7
B
218 222parallel
Strand 8
B
289 294parallel
Strand 9
B
326 330parallel
Strand 10
B
365 367parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
79 85first strand
Strand 2
C
88 95anti-parallel
Strand 3
C
98 107anti-parallel
Strand 4
C
134 138anti-parallel
Strand 5
C
116 122parallel
Strand 6
C
189 199parallel
Strand 7
C
218 222parallel
Strand 8
C
289 294parallel
Strand 9
C
326 330parallel
Strand 10
C
365 367parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
79 85first strand
Strand 2
D
88 95anti-parallel
Strand 3
D
98 107anti-parallel
Strand 4
D
134 138anti-parallel
Strand 5
D
116 122parallel
Strand 6
D
189 199parallel
Strand 7
D
218 222parallel
Strand 8
D
289 294parallel
Strand 9
D
326 330parallel
Strand 10
D
365 367parallel
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