Analysis of interatomic Contacts of Structural Units in PDB entry:
8B4H

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8B4H entry

There are 8 chains in PDB entry 8B4H (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	VAL 358
B	MET 1	VAL 358
C	MET 1	ALA 373
D	MET 1	ALA 373
E	C 4	G 60
F	C 1	A 55
G	C 4	G 60
H	C 1	A 55

There are 56 helices in PDB entry 8B4H. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	17	Right-handed alpha
Helix 2	AA2	A	19	28	Right-handed alpha
Helix 3	AA3	A	30	39	Right-handed alpha
Helix 4	AA4	A	56	58	Right-handed 310
Helix 5	AA5	A	59	69	Right-handed alpha
Helix 6	AA6	A	74	84	Right-handed alpha
Helix 7	AA7	A	91	104	Right-handed alpha
Helix 8	AA8	A	162	178	Right-handed alpha
Helix 9	AA9	A	204	215	Right-handed alpha
Helix 10	AB1	A	225	228	Right-handed 310
Helix 11	AB2	A	229	243	Right-handed alpha
Helix 12	AB3	A	251	266	Right-handed alpha
Helix 13	AB4	A	278	282	Right-handed 310
Helix 14	AB5	A	322	326	Right-handed 310
Helix 15	AB6	B	3	17	Right-handed alpha
Helix 16	AB7	B	19	28	Right-handed alpha
Helix 17	AB8	B	30	39	Right-handed alpha
Helix 18	AB9	B	56	58	Right-handed 310
Helix 19	AC1	B	59	69	Right-handed alpha
Helix 20	AC2	B	74	84	Right-handed alpha
Helix 21	AC3	B	91	104	Right-handed alpha
Helix 22	AC4	B	162	178	Right-handed alpha
Helix 23	AC5	B	204	215	Right-handed alpha
Helix 24	AC6	B	225	228	Right-handed 310
Helix 25	AC7	B	229	243	Right-handed alpha
Helix 26	AC8	B	251	266	Right-handed alpha
Helix 27	AC9	B	278	282	Right-handed 310
Helix 28	AD1	B	322	326	Right-handed 310
Helix 29	AD2	C	3	17	Right-handed alpha
Helix 30	AD3	C	19	28	Right-handed alpha
Helix 31	AD4	C	30	39	Right-handed alpha
Helix 32	AD5	C	56	58	Right-handed 310
Helix 33	AD6	C	59	69	Right-handed alpha
Helix 34	AD7	C	76	85	Right-handed alpha
Helix 35	AD8	C	91	108	Right-handed alpha
Helix 36	AD9	C	162	178	Right-handed alpha
Helix 37	AE1	C	204	214	Right-handed alpha
Helix 38	AE2	C	235	243	Right-handed alpha
Helix 39	AE3	C	251	267	Right-handed alpha
Helix 40	AE4	C	278	285	Right-handed alpha
Helix 41	AE5	C	322	326	Right-handed 310
Helix 42	AE6	C	360	373	Right-handed alpha
Helix 43	AE7	D	3	17	Right-handed alpha
Helix 44	AE8	D	19	28	Right-handed alpha
Helix 45	AE9	D	30	39	Right-handed alpha
Helix 46	AF1	D	56	58	Right-handed 310
Helix 47	AF2	D	59	69	Right-handed alpha
Helix 48	AF3	D	76	85	Right-handed alpha
Helix 49	AF4	D	91	108	Right-handed alpha
Helix 50	AF5	D	162	178	Right-handed alpha
Helix 51	AF6	D	204	214	Right-handed alpha
Helix 52	AF7	D	235	243	Right-handed alpha
Helix 53	AF8	D	251	267	Right-handed alpha
Helix 54	AF9	D	278	285	Right-handed alpha
Helix 55	AG1	D	322	326	Right-handed 310
Helix 56	AG2	D	360	373	Right-handed alpha

There are 16 sheets in PDB entry 8B4H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	153	158	first strand
Strand 2	A	136	147	anti-parallel
Strand 3	A	121	133	anti-parallel
Strand 4	A	183	185	parallel
Strand 5	A	217	218	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	303	305	first strand
Strand 2	A	329	334	anti-parallel
Strand 3	A	340	344	anti-parallel
Strand 4	A	347	349	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	311	314	first strand
Strand 2	A	317	320	anti-parallel
Strand 3	A	353	355	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	153	158	first strand
Strand 2	B	136	147	anti-parallel
Strand 3	B	121	133	anti-parallel
Strand 4	B	183	185	parallel
Strand 5	B	217	218	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	303	305	first strand
Strand 2	B	329	334	anti-parallel
Strand 3	B	340	344	anti-parallel
Strand 4	B	347	349	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	311	314	first strand
Strand 2	B	317	320	anti-parallel
Strand 3	B	353	355	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	153	158	first strand
Strand 2	C	141	147	anti-parallel
Strand 3	C	120	127	anti-parallel
Strand 4	C	183	186	parallel
Strand 5	C	217	220	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	131	133	first strand
Strand 2	C	136	138	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	193	196	first strand
Strand 2	C	201	203	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	303	305	first strand
Strand 2	C	329	334	anti-parallel
Strand 3	C	340	344	anti-parallel
Strand 4	C	347	348	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	311	314	first strand
Strand 2	C	317	320	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	153	158	first strand
Strand 2	D	141	147	anti-parallel
Strand 3	D	120	127	anti-parallel
Strand 4	D	183	186	parallel
Strand 5	D	217	220	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	131	133	first strand
Strand 2	D	136	138	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	193	196	first strand
Strand 2	D	201	203	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	303	305	first strand
Strand 2	D	329	334	anti-parallel
Strand 3	D	340	344	anti-parallel
Strand 4	D	347	348	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	311	314	first strand
Strand 2	D	317	320	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8B4H

Analysis of interatomic Contacts of Structural Units in PDB entry:
8B4H