Analysis of interatomic Contacts of Structural Units in PDB entry:
8B4I


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8B4I entry

There are 10 chains in PDB entry 8B4I (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 25PHE 349
B
 ALA 25PHE 349
C
 TRP 63LEU 122
D
 TRP 63LEU 122
E
 ALA 9VAL 46
F
 ALA 9VAL 46
G
 SER 22GLN 60
H
 SER 22GLN 60
I
 ALA 3SER 53
J
 ALA 3SER 53
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 22 helices in PDB entry 8B4I. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 34Right-handed alpha
Helix 2
AA2
A
43 47Right-handed 310
Helix 3
AA3
A
48 53Right-handed alpha
Helix 4
AA4
A
334 343Right-handed alpha
Helix 5
AA5
B
26 34Right-handed alpha
Helix 6
AA6
B
43 47Right-handed 310
Helix 7
AA7
B
48 53Right-handed alpha
Helix 8
AA8
B
334 343Right-handed alpha
Helix 9
AA9
C
64 122Right-handed alpha
Helix 10
AB1
D
64 122Right-handed alpha
Helix 11
AB2
E
11 46Right-handed alpha
Helix 12
AB3
F
11 46Right-handed alpha
Helix 13
AB4
G
23 28Right-handed alpha
Helix 14
AB5
G
32 51Right-handed alpha
Helix 15
AB6
G
52 58Right-handed 310
Helix 16
AB7
H
23 28Right-handed alpha
Helix 17
AB8
H
31 50Right-handed alpha
Helix 18
AB9
H
51 58Right-handed 310
Helix 19
AC1
I
5 39Right-handed alpha
Helix 20
AC2
I
44 49Right-handed alpha
Helix 21
AC3
J
5 39Right-handed alpha
Helix 22
AC4
J
46 50Right-handed 310
Back to top of page

There are 2 sheets in PDB entry 8B4I. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 20 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 74first strand
Strand 2
A
78 86anti-parallel
Strand 3
A
94 101anti-parallel
Strand 4
A
105 112anti-parallel
Strand 5
A
117 124anti-parallel
Strand 6
A
129 137anti-parallel
Strand 7
A
143 151anti-parallel
Strand 8
A
155 165anti-parallel
Strand 9
A
172 184anti-parallel
Strand 10
A
187 197anti-parallel
Strand 11
A
205 215anti-parallel
Strand 12
A
219 225anti-parallel
Strand 13
A
231 240anti-parallel
Strand 14
A
243 255anti-parallel
Strand 15
A
263 277anti-parallel
Strand 16
A
280 286anti-parallel
Strand 17
A
291 299anti-parallel
Strand 18
A
306 314anti-parallel
Strand 19
A
319 331anti-parallel
Strand 20
A
64 74parallel
Back to list of sheets
Back to top of page

There are 20 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 74first strand
Strand 2
B
78 86anti-parallel
Strand 3
B
94 101anti-parallel
Strand 4
B
105 112anti-parallel
Strand 5
B
117 124anti-parallel
Strand 6
B
129 137anti-parallel
Strand 7
B
143 151anti-parallel
Strand 8
B
155 165anti-parallel
Strand 9
B
172 184anti-parallel
Strand 10
B
187 197anti-parallel
Strand 11
B
205 215anti-parallel
Strand 12
B
219 225anti-parallel
Strand 13
B
231 240anti-parallel
Strand 14
B
243 255anti-parallel
Strand 15
B
263 276anti-parallel
Strand 16
B
280 286anti-parallel
Strand 17
B
291 299anti-parallel
Strand 18
B
306 314anti-parallel
Strand 19
B
319 331anti-parallel
Strand 20
B
64 74parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il