Analysis of interatomic Contacts of Structural Units in PDB entry:
8B4O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8B4O entry

There are 2 chains in PDB entry 8B4O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 MET 1PRO 330
A
 MET 1GLN 501
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 8B4O. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
2 36Right-handed alpha
Helix 2
AA2
B
38 50Right-handed alpha
Helix 3
AA3
B
53 71Right-handed alpha
Helix 4
AA4
B
71 82Right-handed alpha
Helix 5
AA5
B
82 102Right-handed alpha
Helix 6
AA6
B
103 105Right-handed 310
Helix 7
AA7
B
108 140Right-handed alpha
Helix 8
AA8
B
153 159Right-handed alpha
Helix 9
AA9
B
160 186Right-handed alpha
Helix 10
AB1
B
188 197Right-handed alpha
Helix 11
AB2
B
197 221Right-handed alpha
Helix 12
AB3
B
224 245Right-handed alpha
Helix 13
AB4
B
247 269Right-handed alpha
Helix 14
AB5
B
293 322Right-handed alpha
Helix 15
AB6
A
2 43Right-handed alpha
Helix 16
AB7
A
44 80Right-handed alpha
Helix 17
AB8
A
80 87Right-handed alpha
Helix 18
AB9
A
87 116Right-handed alpha
Helix 19
AC1
A
121 152Right-handed alpha
Helix 20
AC2
A
169 175Right-handed alpha
Helix 21
AC3
A
176 212Right-handed alpha
Helix 22
AC4
A
226 260Right-handed alpha
Helix 23
AC5
A
260 266Right-handed alpha
Helix 24
AC6
A
319 331Right-handed alpha
Helix 25
AC7
A
338 368Right-handed alpha
Helix 26
AC8
A
369 371Right-handed 310
Helix 27
AC9
A
375 389Right-handed alpha
Helix 28
AD1
A
390 407Right-handed alpha
Helix 29
AD2
A
415 419Right-handed 310
Helix 30
AD3
A
421 425Right-handed 310
Helix 31
AD4
A
439 472Right-handed alpha
Helix 32
AD5
A
481 485Right-handed 310
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There are 3 sheets in PDB entry 8B4O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
273 275first strand
Strand 2
B
285 286anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 159first strand
Strand 2
A
164 167anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
410 412first strand
Strand 2
A
429 430anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il