Analysis of interatomic Contacts of Structural Units in PDB entry:
8B4Z

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8B4Z entry

There are 2 chains in PDB entry 8B4Z (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	LYS 1193
B	SER 11	VAL 1236

There are 95 helices in PDB entry 8B4Z. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	25	30	Right-handed alpha
Helix 2	AA2	A	47	56	Right-handed alpha
Helix 3	AA3	A	122	134	Right-handed alpha
Helix 4	AA4	A	142	154	Right-handed alpha
Helix 5	AA5	A	159	163	Right-handed 310
Helix 6	AA6	A	164	179	Right-handed alpha
Helix 7	AA7	A	222	226	Right-handed 310
Helix 8	AA8	A	237	241	Right-handed 310
Helix 9	AA9	A	248	255	Right-handed alpha
Helix 10	AB1	A	278	292	Right-handed alpha
Helix 11	AB2	A	294	299	Right-handed 310
Helix 12	AB3	A	327	334	Right-handed alpha
Helix 13	AB4	A	382	398	Right-handed alpha
Helix 14	AB5	A	399	414	Right-handed alpha
Helix 15	AB6	A	419	424	Right-handed alpha
Helix 16	AB7	A	428	433	Right-handed alpha
Helix 17	AB8	A	440	454	Right-handed alpha
Helix 18	AB9	A	503	512	Right-handed alpha
Helix 19	AC1	A	539	547	Right-handed 310
Helix 20	AC2	A	571	583	Right-handed alpha
Helix 21	AC3	A	586	590	Right-handed 310
Helix 22	AC4	A	591	599	Right-handed alpha
Helix 23	AC5	A	600	602	Right-handed 310
Helix 24	AC6	A	603	616	Right-handed alpha
Helix 25	AC7	A	622	628	Right-handed alpha
Helix 26	AC8	A	644	649	Right-handed alpha
Helix 27	AC9	A	655	659	Right-handed 310
Helix 28	AD1	A	676	685	Right-handed alpha
Helix 29	AD2	A	693	705	Right-handed alpha
Helix 30	AD3	A	707	734	Right-handed alpha
Helix 31	AD4	A	736	743	Right-handed alpha
Helix 32	AD5	A	751	758	Right-handed alpha
Helix 33	AD6	A	759	766	Right-handed 310
Helix 34	AD7	A	769	788	Right-handed alpha
Helix 35	AD8	A	796	800	Right-handed 310
Helix 36	AD9	A	817	821	Right-handed 310
Helix 37	AE1	A	829	837	Right-handed alpha
Helix 38	AE2	A	852	856	Right-handed 310
Helix 39	AE3	A	864	866	Right-handed 310
Helix 40	AE4	A	877	893	Right-handed alpha
Helix 41	AE5	A	919	924	Right-handed alpha
Helix 42	AE6	A	936	940	Right-handed 310
Helix 43	AE7	A	942	947	Right-handed 310
Helix 44	AE8	A	1062	1066	Right-handed 310
Helix 45	AE9	A	1069	1078	Right-handed alpha
Helix 46	AF1	A	1107	1115	Right-handed alpha
Helix 47	AF2	A	1116	1127	Right-handed alpha
Helix 48	AF3	A	1168	1181	Right-handed alpha
Helix 49	AF4	B	25	30	Right-handed alpha
Helix 50	AF5	B	47	56	Right-handed alpha
Helix 51	AF6	B	64	66	Right-handed 310
Helix 52	AF7	B	122	134	Right-handed alpha
Helix 53	AF8	B	135	137	Right-handed 310
Helix 54	AF9	B	142	154	Right-handed alpha
Helix 55	AG1	B	163	180	Right-handed alpha
Helix 56	AG2	B	237	241	Right-handed 310
Helix 57	AG3	B	248	254	Right-handed alpha
Helix 58	AG4	B	278	292	Right-handed alpha
Helix 59	AG5	B	294	299	Right-handed 310
Helix 60	AG6	B	329	334	Right-handed alpha
Helix 61	AG7	B	377	381	Right-handed 310
Helix 62	AG8	B	382	397	Right-handed alpha
Helix 63	AG9	B	399	414	Right-handed alpha
Helix 64	AH1	B	418	424	Right-handed alpha
Helix 65	AH2	B	428	433	Right-handed alpha
Helix 66	AH3	B	440	454	Right-handed alpha
Helix 67	AH4	B	503	512	Right-handed alpha
Helix 68	AH5	B	539	543	Right-handed 310
Helix 69	AH6	B	571	583	Right-handed alpha
Helix 70	AH7	B	591	601	Right-handed alpha
Helix 71	AH8	B	603	614	Right-handed alpha
Helix 72	AH9	B	622	628	Right-handed alpha
Helix 73	AI1	B	644	649	Right-handed alpha
Helix 74	AI2	B	676	686	Right-handed alpha
Helix 75	AI3	B	693	705	Right-handed alpha
Helix 76	AI4	B	707	734	Right-handed alpha
Helix 77	AI5	B	736	745	Right-handed alpha
Helix 78	AI6	B	751	758	Right-handed alpha
Helix 79	AI7	B	769	788	Right-handed alpha
Helix 80	AI8	B	793	800	Right-handed alpha
Helix 81	AI9	B	829	837	Right-handed alpha
Helix 82	AJ1	B	863	866	Right-handed 310
Helix 83	AJ2	B	877	893	Right-handed alpha
Helix 84	AJ3	B	936	940	Right-handed 310
Helix 85	AJ4	B	942	947	Right-handed 310
Helix 86	AJ5	B	1006	1018	Right-handed alpha
Helix 87	AJ6	B	1019	1023	Right-handed 310
Helix 88	AJ7	B	1062	1066	Right-handed 310
Helix 89	AJ8	B	1069	1078	Right-handed alpha
Helix 90	AJ9	B	1107	1115	Right-handed alpha
Helix 91	AK1	B	1115	1126	Right-handed alpha
Helix 92	AK2	B	1156	1160	Right-handed 310
Helix 93	AK3	B	1169	1174	Right-handed alpha
Helix 94	AK4	B	1199	1203	Right-handed 310
Helix 95	AK5	B	1223	1227	Right-handed 310

There are 25 sheets in PDB entry 8B4Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	22	23	first strand
Strand 2	A	868	869	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	41	first strand
Strand 2	A	1139	1142	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	69	first strand
Strand 2	A	75	84	anti-parallel
Strand 3	A	90	98	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	69	first strand
Strand 2	A	75	84	anti-parallel
Strand 3	A	1130	1131	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	314	316	first strand
Strand 2	A	106	111	parallel
Strand 3	A	667	672	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	116	first strand
Strand 2	A	155	157	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	269	first strand
Strand 2	A	320	322	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	416	417	first strand
Strand 2	A	660	661	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	455	457	first strand
Strand 2	A	520	522	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	914	918	first strand
Strand 2	A	894	904	anti-parallel
Strand 3	A	954	964	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	972	974	first strand
Strand 2	A	982	984	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1028	1037	first strand
Strand 2	A	1044	1052	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1186	1187	first strand
Strand 2	A	1190	1191	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	22	23	first strand
Strand 2	B	868	869	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	69	first strand
Strand 2	B	76	78	anti-parallel
Strand 3	B	96	98	anti-parallel
Strand 4	B	416	417	anti-parallel
Strand 5	B	660	661	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	93	first strand
Strand 2	B	80	84	anti-parallel
Strand 3	B	1130	1131	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	314	316	first strand
Strand 2	B	106	111	parallel
Strand 3	B	667	672	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	114	116	first strand
Strand 2	B	155	157	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	267	271	first strand
Strand 2	B	320	324	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	368	369	first strand
Strand 2	B	375	376	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	468	472	first strand
Strand 2	B	455	460	anti-parallel
Strand 3	B	520	522	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	894	899	first strand
Strand 2	B	956	964	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	901	904	first strand
Strand 2	B	914	917	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	972	974	first strand
Strand 2	B	982	984	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1028	1037	first strand
Strand 2	B	1044	1052	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8B4Z

Analysis of interatomic Contacts of Structural Units in PDB entry:
8B4Z