Analysis of interatomic Contacts of Structural Units in PDB entry:
8B52


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8B52 entry

There are 2 chains in PDB entry 8B52 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 7ALA 267
B
 ARG 7VAL 268
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 20 helices in PDB entry 8B52. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 19Right-handed alpha
Helix 2
AA2
A
21 30Right-handed alpha
Helix 3
AA3
A
38 48Right-handed alpha
Helix 4
AA4
A
58 69Right-handed alpha
Helix 5
AA5
A
86 93Right-handed alpha
Helix 6
AA6
A
121 123Right-handed 310
Helix 7
AA7
A
132 136Right-handed 310
Helix 8
AA8
A
154 174Right-handed alpha
Helix 9
AA9
A
189 204Right-handed alpha
Helix 10
AB1
A
229 246Right-handed alpha
Helix 11
AB2
B
8 19Right-handed alpha
Helix 12
AB3
B
21 30Right-handed alpha
Helix 13
AB4
B
38 48Right-handed alpha
Helix 14
AB5
B
58 69Right-handed alpha
Helix 15
AB6
B
86 93Right-handed alpha
Helix 16
AB7
B
121 123Right-handed 310
Helix 17
AB8
B
132 136Right-handed 310
Helix 18
AB9
B
154 174Right-handed alpha
Helix 19
AC1
B
189 204Right-handed alpha
Helix 20
AC2
B
229 247Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 8B52. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 36first strand
Strand 2
A
254 256parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 129first strand
Strand 2
A
98 105parallel
Strand 3
A
76 81parallel
Strand 4
A
143 146parallel
Strand 5
A
179 184parallel
Strand 6
A
220 223anti-parallel
Strand 7
A
206 208anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 36first strand
Strand 2
B
254 256parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 128first strand
Strand 2
B
98 104parallel
Strand 3
B
76 81parallel
Strand 4
B
143 146parallel
Strand 5
B
179 184parallel
Strand 6
B
220 223anti-parallel
Strand 7
B
206 208anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il