Analysis of interatomic Contacts of Structural Units in PDB entry:
8B5B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8B5B entry

There are 9 chains in PDB entry 8B5B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 41GLU 167
B
 HIS 42THR 166
C
 GLY 40THR 166
D
 GLY 2GLY 4
D
 GLY 6GLY 7
D
 GLY 9GLY 9
E
 SER 1GLY 4
E
 GLY 6GLY 7
E
 GLY 9LEU 10
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 8B5B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
60 69Right-handed alpha
Helix 2
AA2
A
69 77Right-handed alpha
Helix 3
AA3
A
80 84Right-handed 310
Helix 4
AA4
A
96 101Right-handed alpha
Helix 5
AA5
A
106 116Right-handed alpha
Helix 6
AA6
A
121 140Right-handed alpha
Helix 7
AA7
A
144 163Right-handed alpha
Helix 8
AA8
B
60 69Right-handed alpha
Helix 9
AA9
B
69 76Right-handed alpha
Helix 10
AB1
B
80 84Right-handed 310
Helix 11
AB2
B
96 101Right-handed alpha
Helix 12
AB3
B
106 116Right-handed alpha
Helix 13
AB4
B
121 140Right-handed alpha
Helix 14
AB5
B
144 162Right-handed alpha
Helix 15
AB6
C
60 69Right-handed alpha
Helix 16
AB7
C
69 76Right-handed alpha
Helix 17
AB8
C
80 84Right-handed 310
Helix 18
AB9
C
96 101Right-handed alpha
Helix 19
AC1
C
106 116Right-handed alpha
Helix 20
AC2
C
121 140Right-handed alpha
Helix 21
AC3
C
144 162Right-handed alpha
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There are no sheets in PDB entry 8B5B
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il