Analysis of interatomic Contacts of Structural Units in PDB entry:
8B5D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8B5D entry

There are 2 chains in PDB entry 8B5D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 29ALA 251
B
 THR 28THR 250
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 8B5D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
52 66Right-handed alpha
Helix 2
AA2
A
75 85Right-handed alpha
Helix 3
AA3
A
100 103Right-handed 310
Helix 4
AA4
A
128 133Right-handed 310
Helix 5
AA5
A
143 157Right-handed alpha
Helix 6
AA6
A
165 175Right-handed alpha
Helix 7
AA7
A
185 194Right-handed alpha
Helix 8
AA8
A
220 237Right-handed alpha
Helix 9
AA9
A
238 247Right-handed alpha
Helix 10
AB1
B
52 66Right-handed alpha
Helix 11
AB2
B
75 85Right-handed alpha
Helix 12
AB3
B
100 103Right-handed 310
Helix 13
AB4
B
128 133Right-handed 310
Helix 14
AB5
B
143 152Right-handed alpha
Helix 15
AB6
B
152 157Right-handed alpha
Helix 16
AB7
B
165 175Right-handed alpha
Helix 17
AB8
B
185 193Right-handed alpha
Helix 18
AB9
B
220 237Right-handed alpha
Helix 19
AC1
B
238 247Right-handed alpha
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There are 8 sheets in PDB entry 8B5D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 72first strand
Strand 2
A
30 33parallel
Strand 3
A
90 91parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 44first strand
Strand 2
A
50 51anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 107first strand
Strand 2
A
214 216anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 163first strand
Strand 2
A
136 140parallel
Strand 3
A
180 184parallel
Strand 4
A
112 119anti-parallel
Strand 5
A
205 211anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
68 72first strand
Strand 2
B
29 33parallel
Strand 3
B
90 91parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 44first strand
Strand 2
B
50 51anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
105 107first strand
Strand 2
B
214 216anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
159 163first strand
Strand 2
B
136 140parallel
Strand 3
B
180 184parallel
Strand 4
B
114 119anti-parallel
Strand 5
B
205 207anti-parallel
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