Analysis of interatomic Contacts of Structural Units in PDB entry:
8B5O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8B5O entry

There are 4 chains in PDB entry 8B5O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 283
B
 MET 1GLU 282
C
 MET 1GLN 284
D
 MET 1ARG 281
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 66 helices in PDB entry 8B5O. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
31 36Right-handed 310
Helix 2
AA2
A
38 42Right-handed 310
Helix 3
AA3
A
68 84Right-handed alpha
Helix 4
AA4
A
95 108Right-handed alpha
Helix 5
AA5
A
126 132Right-handed 310
Helix 6
AA6
A
133 141Right-handed alpha
Helix 7
AA7
A
144 150Right-handed alpha
Helix 8
AA8
A
153 158Right-handed alpha
Helix 9
AA9
A
158 163Right-handed alpha
Helix 10
AB1
A
169 178Right-handed alpha
Helix 11
AB2
A
182 185Right-handed 310
Helix 12
AB3
A
186 196Right-handed alpha
Helix 13
AB4
A
202 217Right-handed alpha
Helix 14
AB5
A
238 246Right-handed alpha
Helix 15
AB6
A
260 265Right-handed alpha
Helix 16
AB7
A
265 283Right-handed alpha
Helix 17
AB8
B
31 36Right-handed 310
Helix 18
AB9
B
38 42Right-handed 310
Helix 19
AC1
B
68 84Right-handed alpha
Helix 20
AC2
B
95 108Right-handed alpha
Helix 21
AC3
B
126 132Right-handed 310
Helix 22
AC4
B
133 141Right-handed alpha
Helix 23
AC5
B
144 150Right-handed alpha
Helix 24
AC6
B
153 158Right-handed alpha
Helix 25
AC7
B
158 163Right-handed alpha
Helix 26
AC8
B
169 178Right-handed alpha
Helix 27
AC9
B
182 185Right-handed 310
Helix 28
AD1
B
186 196Right-handed alpha
Helix 29
AD2
B
202 217Right-handed alpha
Helix 30
AD3
B
238 246Right-handed alpha
Helix 31
AD4
B
260 264Right-handed 310
Helix 32
AD5
B
265 282Right-handed alpha
Helix 33
AD6
C
31 36Right-handed 310
Helix 34
AD7
C
38 42Right-handed 310
Helix 35
AD8
C
68 84Right-handed alpha
Helix 36
AD9
C
95 108Right-handed alpha
Helix 37
AE1
C
126 132Right-handed 310
Helix 38
AE2
C
133 141Right-handed alpha
Helix 39
AE3
C
144 150Right-handed alpha
Helix 40
AE4
C
153 158Right-handed alpha
Helix 41
AE5
C
158 163Right-handed alpha
Helix 42
AE6
C
169 178Right-handed alpha
Helix 43
AE7
C
182 185Right-handed 310
Helix 44
AE8
C
186 196Right-handed alpha
Helix 45
AE9
C
202 217Right-handed alpha
Helix 46
AF1
C
238 246Right-handed alpha
Helix 47
AF2
C
260 264Right-handed 310
Helix 48
AF3
C
265 284Right-handed alpha
Helix 49
AF4
D
31 36Right-handed 310
Helix 50
AF5
D
38 42Right-handed 310
Helix 51
AF6
D
68 83Right-handed alpha
Helix 52
AF7
D
95 108Right-handed alpha
Helix 53
AF8
D
109 112Right-handed 310
Helix 54
AF9
D
127 132Right-handed 310
Helix 55
AG1
D
133 141Right-handed alpha
Helix 56
AG2
D
143 150Right-handed alpha
Helix 57
AG3
D
153 158Right-handed alpha
Helix 58
AG4
D
160 164Right-handed 310
Helix 59
AG5
D
169 177Right-handed alpha
Helix 60
AG6
D
182 185Right-handed 310
Helix 61
AG7
D
186 196Right-handed alpha
Helix 62
AG8
D
202 214Right-handed alpha
Helix 63
AG9
D
215 219Right-handed 310
Helix 64
AH1
D
238 246Right-handed alpha
Helix 65
AH2
D
260 264Right-handed 310
Helix 66
AH3
D
265 281Right-handed alpha
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There are 4 sheets in PDB entry 8B5O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 6first strand
Strand 2
A
9 16anti-parallel
Strand 3
A
47 51anti-parallel
Strand 4
A
21 25parallel
Strand 5
A
89 94parallel
Strand 6
A
112 118parallel
Strand 7
A
223 230parallel
Strand 8
A
250 257parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 6first strand
Strand 2
B
9 16anti-parallel
Strand 3
B
47 51anti-parallel
Strand 4
B
21 25parallel
Strand 5
B
89 94parallel
Strand 6
B
112 118parallel
Strand 7
B
223 230parallel
Strand 8
B
250 257parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2 6first strand
Strand 2
C
9 16anti-parallel
Strand 3
C
47 51anti-parallel
Strand 4
C
21 25parallel
Strand 5
C
89 94parallel
Strand 6
C
112 118parallel
Strand 7
C
223 230parallel
Strand 8
C
250 257parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
2 6first strand
Strand 2
D
9 16anti-parallel
Strand 3
D
47 51anti-parallel
Strand 4
D
21 25parallel
Strand 5
D
90 94parallel
Strand 6
D
116 118parallel
Strand 7
D
224 230parallel
Strand 8
D
253 257parallel
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