Analysis of interatomic Contacts of Structural Units in PDB entry:
8B5R

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8B5R entry

There are 11 chains in PDB entry 8B5R (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 21	LEU 762
B	ASN 21	PHE 773
C	ASN 21	PHE 773
D	ASN 21	PHE 773
E	ASN 21	PHE 773
F	ASN 21	LEU 762
I	UNK 1	UNK 22
P	MET 1	PRO 298
S	ARG 76	PHE 360
X	PHE 215	LEU 225
Y	ALA 246	LYS 331

There are201 helices in PDB entry 8B5R. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	42	49	Right-handed alpha
Helix 2	AA2	A	85	93	Right-handed alpha
Helix 3	AA3	A	119	124	Right-handed alpha
Helix 4	AA4	A	129	139	Right-handed alpha
Helix 5	AA5	A	190	199	Right-handed alpha
Helix 6	AA6	A	202	207	Right-handed 310
Helix 7	AA7	A	209	226	Right-handed alpha
Helix 8	AA8	A	226	234	Right-handed alpha
Helix 9	AA9	A	251	261	Right-handed alpha
Helix 10	AB1	A	281	297	Right-handed alpha
Helix 11	AB2	A	305	310	Right-handed alpha
Helix 12	AB3	A	318	334	Right-handed alpha
Helix 13	AB4	A	349	353	Right-handed 310
Helix 14	AB5	A	354	359	Right-handed alpha
Helix 15	AB6	A	373	388	Right-handed alpha
Helix 16	AB7	A	395	403	Right-handed alpha
Helix 17	AB8	A	409	431	Right-handed alpha
Helix 18	AB9	A	438	444	Right-handed alpha
Helix 19	AC1	A	448	459	Right-handed alpha
Helix 20	AC2	A	461	468	Right-handed alpha
Helix 21	AC3	A	482	495	Right-handed alpha
Helix 22	AC4	A	499	507	Right-handed alpha
Helix 23	AC5	A	523	536	Right-handed alpha
Helix 24	AC6	A	543	547	Right-handed 310
Helix 25	AC7	A	553	569	Right-handed alpha
Helix 26	AC8	A	578	584	Right-handed alpha
Helix 27	AC9	A	595	610	Right-handed alpha
Helix 28	AD1	A	625	629	Right-handed 310
Helix 29	AD2	A	650	663	Right-handed alpha
Helix 30	AD3	A	671	679	Right-handed alpha
Helix 31	AD4	A	680	682	Right-handed 310
Helix 32	AD5	A	683	716	Right-handed alpha
Helix 33	AD6	A	732	743	Right-handed alpha
Helix 34	AD7	A	748	761	Right-handed alpha
Helix 35	AD8	B	42	49	Right-handed alpha
Helix 36	AD9	B	85	93	Right-handed alpha
Helix 37	AE1	B	190	199	Right-handed alpha
Helix 38	AE2	B	209	226	Right-handed alpha
Helix 39	AE3	B	226	234	Right-handed alpha
Helix 40	AE4	B	250	262	Right-handed alpha
Helix 41	AE5	B	270	274	Right-handed 310
Helix 42	AE6	B	280	297	Right-handed alpha
Helix 43	AE7	B	318	333	Right-handed alpha
Helix 44	AE8	B	349	353	Right-handed 310
Helix 45	AE9	B	354	359	Right-handed alpha
Helix 46	AF1	B	373	386	Right-handed alpha
Helix 47	AF2	B	395	403	Right-handed alpha
Helix 48	AF3	B	409	430	Right-handed alpha
Helix 49	AF4	B	438	443	Right-handed alpha
Helix 50	AF5	B	448	458	Right-handed alpha
Helix 51	AF6	B	482	499	Right-handed alpha
Helix 52	AF7	B	499	507	Right-handed alpha
Helix 53	AF8	B	523	534	Right-handed alpha
Helix 54	AF9	B	553	569	Right-handed alpha
Helix 55	AG1	B	578	583	Right-handed alpha
Helix 56	AG2	B	595	609	Right-handed alpha
Helix 57	AG3	B	625	629	Right-handed 310
Helix 58	AG4	B	630	635	Right-handed alpha
Helix 59	AG5	B	649	661	Right-handed alpha
Helix 60	AG6	B	671	679	Right-handed alpha
Helix 61	AG7	B	683	716	Right-handed alpha
Helix 62	AG8	B	722	726	Right-handed 310
Helix 63	AG9	B	732	743	Right-handed alpha
Helix 64	AH1	B	748	766	Right-handed alpha
Helix 65	AH2	C	42	49	Right-handed alpha
Helix 66	AH3	C	85	92	Right-handed alpha
Helix 67	AH4	C	119	124	Right-handed alpha
Helix 68	AH5	C	129	140	Right-handed alpha
Helix 69	AH6	C	190	199	Right-handed alpha
Helix 70	AH7	C	202	207	Right-handed 310
Helix 71	AH8	C	211	226	Right-handed alpha
Helix 72	AH9	C	226	233	Right-handed alpha
Helix 73	AI1	C	251	262	Right-handed alpha
Helix 74	AI2	C	271	275	Right-handed 310
Helix 75	AI3	C	280	297	Right-handed alpha
Helix 76	AI4	C	318	333	Right-handed alpha
Helix 77	AI5	C	354	359	Right-handed alpha
Helix 78	AI6	C	373	388	Right-handed alpha
Helix 79	AI7	C	395	403	Right-handed alpha
Helix 80	AI8	C	410	430	Right-handed alpha
Helix 81	AI9	C	438	444	Right-handed alpha
Helix 82	AJ1	C	448	459	Right-handed alpha
Helix 83	AJ2	C	461	468	Right-handed alpha
Helix 84	AJ3	C	482	499	Right-handed alpha
Helix 85	AJ4	C	499	507	Right-handed alpha
Helix 86	AJ5	C	523	535	Right-handed alpha
Helix 87	AJ6	C	554	569	Right-handed alpha
Helix 88	AJ7	C	578	582	Right-handed 310
Helix 89	AJ8	C	595	609	Right-handed alpha
Helix 90	AJ9	C	625	629	Right-handed 310
Helix 91	AK1	C	630	635	Right-handed alpha
Helix 92	AK2	C	649	663	Right-handed alpha
Helix 93	AK3	C	671	680	Right-handed alpha
Helix 94	AK4	C	683	713	Right-handed alpha
Helix 95	AK5	C	721	726	Right-handed alpha
Helix 96	AK6	C	732	742	Right-handed alpha
Helix 97	AK7	C	748	765	Right-handed alpha
Helix 98	AK8	D	42	49	Right-handed alpha
Helix 99	AK9	D	85	92	Right-handed alpha
Helix 100	AL1	D	119	124	Right-handed alpha
Helix 101	AL2	D	129	139	Right-handed alpha
Helix 102	AL3	D	190	199	Right-handed alpha
Helix 103	AL4	D	202	206	Right-handed 310
Helix 104	AL5	D	209	226	Right-handed alpha
Helix 105	AL6	D	226	234	Right-handed alpha
Helix 106	AL7	D	250	262	Right-handed alpha
Helix 107	AL8	D	280	297	Right-handed alpha
Helix 108	AL9	D	318	333	Right-handed alpha
Helix 109	AM1	D	373	387	Right-handed alpha
Helix 110	AM2	D	395	403	Right-handed alpha
Helix 111	AM3	D	408	430	Right-handed alpha
Helix 112	AM4	D	438	446	Right-handed alpha
Helix 113	AM5	D	448	459	Right-handed alpha
Helix 114	AM6	D	461	466	Right-handed alpha
Helix 115	AM7	D	482	506	Right-handed alpha
Helix 116	AM8	D	524	535	Right-handed alpha
Helix 117	AM9	D	553	569	Right-handed alpha
Helix 118	AN1	D	578	584	Right-handed alpha
Helix 119	AN2	D	591	609	Right-handed alpha
Helix 120	AN3	D	630	635	Right-handed alpha
Helix 121	AN4	D	649	662	Right-handed alpha
Helix 122	AN5	D	671	680	Right-handed alpha
Helix 123	AN6	D	683	712	Right-handed alpha
Helix 124	AN7	D	732	742	Right-handed alpha
Helix 125	AN8	D	748	765	Right-handed alpha
Helix 126	AN9	E	73	77	Right-handed 310
Helix 127	AO1	E	87	93	Right-handed alpha
Helix 128	AO2	E	119	124	Right-handed alpha
Helix 129	AO3	E	129	139	Right-handed alpha
Helix 130	AO4	E	192	200	Right-handed alpha
Helix 131	AO5	E	202	206	Right-handed 310
Helix 132	AO6	E	208	226	Right-handed alpha
Helix 133	AO7	E	250	262	Right-handed alpha
Helix 134	AO8	E	271	275	Right-handed 310
Helix 135	AO9	E	280	297	Right-handed alpha
Helix 136	AP1	E	318	332	Right-handed alpha
Helix 137	AP2	E	354	359	Right-handed alpha
Helix 138	AP3	E	375	388	Right-handed alpha
Helix 139	AP4	E	395	405	Right-handed alpha
Helix 140	AP5	E	408	430	Right-handed alpha
Helix 141	AP6	E	438	443	Right-handed alpha
Helix 142	AP7	E	448	460	Right-handed alpha
Helix 143	AP8	E	462	468	Right-handed alpha
Helix 144	AP9	E	482	495	Right-handed alpha
Helix 145	AQ1	E	499	507	Right-handed alpha
Helix 146	AQ2	E	523	535	Right-handed alpha
Helix 147	AQ3	E	543	548	Right-handed 310
Helix 148	AQ4	E	553	569	Right-handed alpha
Helix 149	AQ5	E	578	584	Right-handed alpha
Helix 150	AQ6	E	590	608	Right-handed alpha
Helix 151	AQ7	E	625	629	Right-handed 310
Helix 152	AQ8	E	630	635	Right-handed alpha
Helix 153	AQ9	E	649	664	Right-handed alpha
Helix 154	AR1	E	671	680	Right-handed alpha
Helix 155	AR2	E	683	701	Right-handed alpha
Helix 156	AR3	E	702	712	Right-handed alpha
Helix 157	AR4	E	732	743	Right-handed alpha
Helix 158	AR5	E	748	767	Right-handed alpha
Helix 159	AR6	F	42	49	Right-handed alpha
Helix 160	AR7	F	85	93	Right-handed alpha
Helix 161	AR8	F	119	124	Right-handed alpha
Helix 162	AR9	F	129	140	Right-handed alpha
Helix 163	AS1	F	209	226	Right-handed alpha
Helix 164	AS2	F	226	234	Right-handed alpha
Helix 165	AS3	F	249	254	Right-handed 310
Helix 166	AS4	F	258	263	Right-handed alpha
Helix 167	AS5	F	280	294	Right-handed alpha
Helix 168	AS6	F	305	310	Right-handed alpha
Helix 169	AS7	F	319	333	Right-handed alpha
Helix 170	AS8	F	373	388	Right-handed alpha
Helix 171	AS9	F	395	403	Right-handed alpha
Helix 172	AT1	F	408	431	Right-handed alpha
Helix 173	AT2	F	438	445	Right-handed alpha
Helix 174	AT3	F	448	459	Right-handed alpha
Helix 175	AT4	F	482	495	Right-handed alpha
Helix 176	AT5	F	499	507	Right-handed alpha
Helix 177	AT6	F	523	535	Right-handed alpha
Helix 178	AT7	F	554	569	Right-handed alpha
Helix 179	AT8	F	578	584	Right-handed alpha
Helix 180	AT9	F	591	609	Right-handed alpha
Helix 181	AU1	F	630	635	Right-handed alpha
Helix 182	AU2	F	651	664	Right-handed alpha
Helix 183	AU3	F	671	677	Right-handed alpha
Helix 184	AU4	F	685	716	Right-handed alpha
Helix 185	AU5	F	732	743	Right-handed alpha
Helix 186	AU6	F	748	762	Right-handed alpha
Helix 187	AU7	P	2	19	Right-handed alpha
Helix 188	AU8	P	32	49	Right-handed alpha
Helix 189	AU9	P	68	80	Right-handed alpha
Helix 190	AV1	P	99	114	Right-handed alpha
Helix 191	AV2	P	133	144	Right-handed alpha
Helix 192	AV3	P	145	158	Right-handed alpha
Helix 193	AV4	P	183	189	Right-handed alpha
Helix 194	AV5	P	200	206	Right-handed alpha
Helix 195	AV6	P	228	240	Right-handed alpha
Helix 196	AV7	S	311	320	Right-handed alpha
Helix 197	AV8	S	331	335	Right-handed 310
Helix 198	AV9	S	336	347	Right-handed alpha
Helix 199	AW1	Y	278	290	Right-handed alpha
Helix 200	AW2	Y	290	295	Right-handed alpha
Helix 201	AW3	Y	315	320	Right-handed alpha

There are 31 sheets in PDB entry 8B5R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	58	first strand
Strand 2	A	103	104	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	268	first strand
Strand 2	A	301	302	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	516	517	first strand
Strand 2	A	622	623	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	538	540	first strand
Strand 2	A	572	574	parallel
Strand 3	A	617	619	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	25	30	first strand
Strand 2	B	81	84	parallel
Strand 3	B	38	41	anti-parallel
Strand 4	B	65	73	parallel
Strand 5	B	56	61	anti-parallel
Strand 6	B	98	104	anti-parallel
Strand 7	B	25	30	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	151	154	first strand
Strand 2	B	161	165	anti-parallel
Strand 3	B	113	118	anti-parallel
Strand 4	B	181	184	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	144	146	first strand
Strand 2	B	174	176	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	300	303	first strand
Strand 2	B	342	346	parallel
Strand 3	B	240	244	parallel
Strand 4	B	365	368	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	540	542	first strand
Strand 2	B	572	576	parallel
Strand 3	B	617	620	parallel
Strand 4	B	513	517	parallel
Strand 5	B	641	644	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	30	first strand
Strand 2	C	83	84	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	267	268	first strand
Strand 2	C	301	302	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	538	540	first strand
Strand 2	C	572	574	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	58	59	first strand
Strand 2	D	102	103	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	265	266	first strand
Strand 2	D	299	304	parallel
Strand 3	D	341	347	parallel
Strand 4	D	242	244	parallel
Strand 5	D	366	368	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	514	516	first strand
Strand 2	D	641	643	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	538	541	first strand
Strand 2	D	572	576	parallel
Strand 3	D	619	621	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	66	68	first strand
Strand 2	E	58	60	anti-parallel
Strand 3	E	101	102	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	266	268	first strand
Strand 2	E	300	303	parallel
Strand 3	E	342	345	parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	513	514	first strand
Strand 2	E	618	621	parallel
Strand 3	E	573	576	parallel
Strand 4	E	540	542	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	59	61	first strand
Strand 2	F	65	67	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	514	516	first strand
Strand 2	F	620	622	parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	52	55	first strand
Strand 2	P	162	165	parallel
Strand 3	P	169	170	anti-parallel
Strand 4	P	243	245	parallel
Strand 5	P	263	266	parallel
Strand 6	P	255	258	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	59	62	first strand
Strand 2	P	280	285	anti-parallel
Strand 3	P	291	296	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	87	88	first strand
Strand 2	P	118	119	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	80	82	first strand
Strand 2	S	102	104	parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	124	126	first strand
Strand 2	S	146	148	parallel
Strand 3	S	168	170	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	156	157	first strand
Strand 2	S	178	179	parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	212	214	first strand
Strand 2	S	234	236	parallel
Strand 3	S	256	258	parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	278	280	first strand
Strand 2	S	300	302	parallel
Strand 3	S	325	327	parallel
Strand 4	S	352	353	parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	268	274	first strand
Strand 2	Y	256	262	anti-parallel
Strand 3	Y	325	327	parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	298	299	first strand
Strand 2	Y	329	330	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8B5R

Analysis of interatomic Contacts of Structural Units in PDB entry:
8B5R