Analysis of interatomic Contacts of Structural Units in PDB entry:
8B5V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8B5V entry

There are 2 chains in PDB entry 8B5V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 244
B
 LYS 2SER 244
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 21 helices in PDB entry 8B5V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 35Right-handed alpha
Helix 2
AA2
A
46 55Right-handed alpha
Helix 3
AA3
A
57 62Right-handed alpha
Helix 4
AA4
A
68 70Right-handed 310
Helix 5
AA5
A
84 107Right-handed alpha
Helix 6
AA6
A
135 150Right-handed alpha
Helix 7
AA7
A
150 163Right-handed alpha
Helix 8
AA8
A
186 194Right-handed 310
Helix 9
AA9
A
214 219Right-handed alpha
Helix 10
AB1
A
230 243Right-handed alpha
Helix 11
AB2
B
22 36Right-handed alpha
Helix 12
AB3
B
46 55Right-handed alpha
Helix 13
AB4
B
57 62Right-handed alpha
Helix 14
AB5
B
68 70Right-handed 310
Helix 15
AB6
B
84 90Right-handed alpha
Helix 16
AB7
B
90 107Right-handed alpha
Helix 17
AB8
B
135 150Right-handed alpha
Helix 18
AB9
B
150 163Right-handed alpha
Helix 19
AC1
B
186 194Right-handed 310
Helix 20
AC2
B
214 219Right-handed alpha
Helix 21
AC3
B
230 243Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 8B5V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 82first strand
Strand 2
A
72 75anti-parallel
Strand 3
A
64 67anti-parallel
Strand 4
A
38 42parallel
Strand 5
A
4 8parallel
Strand 6
A
200 205parallel
Strand 7
A
224 227parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 120first strand
Strand 2
A
125 127anti-parallel
Strand 3
A
178 182anti-parallel
Strand 4
A
168 171anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 82first strand
Strand 2
B
72 75anti-parallel
Strand 3
B
64 67anti-parallel
Strand 4
B
38 42parallel
Strand 5
B
4 8parallel
Strand 6
B
200 205parallel
Strand 7
B
224 227parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
118 120first strand
Strand 2
B
125 127anti-parallel
Strand 3
B
178 182anti-parallel
Strand 4
B
168 171anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il