Analysis of interatomic Contacts of Structural Units in PDB entry:
8B64

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8B64 entry

There are 34 chains in PDB entry 8B64 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
a	MET 1	LEU 44
e	MET 1	VAL 54
D	ASP 6	PHE 49
b	MET 1	VAL 54
A	ASP 6	PHE 49
E	ASP 6	PHE 49
X	MET 3	TYR 65
L	ALA 1	GLY 281
M	ALA 1	VAL 304
H	MET 1	TYR 245
d	MET 1	VAL 54
B	ASP 6	PHE 49
t	ASP 12	VAL 54
S	THR 13	PHE 49
T	THR 13	PHE 49
s	ASP 12	VAL 54
U	LEU 20	TRP 45
u	ARG 15	TYR 53
r	ASP 12	VAL 54
O	SER 8	PHE 49
R	LEU 12	PHE 49
o	TYR 5	VAL 54
n	MET 1	VAL 54
K	LEU 7	PHE 49
N	SER 8	PHE 49
k	SER 2	VAL 54
j	MET 1	VAL 54
I	SER 8	PHE 49
J	LEU 7	PHE 49
i	SER 2	VAL 54
g	MET 1	VAL 54
F	SER 8	PHE 49
G	SER 8	PHE 49
f	MET 1	VAL 54

There are103 helices in PDB entry 8B64. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	a	3	10	Right-handed 310
Helix 2	AA2	a	12	38	Right-handed alpha
Helix 3	AA3	a	39	42	Right-handed 310
Helix 4	AA4	e	3	10	Right-handed 310
Helix 5	AA5	e	12	38	Right-handed alpha
Helix 6	AA6	e	39	41	Right-handed 310
Helix 7	AA7	e	42	52	Right-handed alpha
Helix 8	AA8	D	13	46	Right-handed alpha
Helix 9	AA9	b	3	10	Right-handed 310
Helix 10	AB1	b	12	37	Right-handed alpha
Helix 11	AB2	b	42	52	Right-handed alpha
Helix 12	AB3	A	13	46	Right-handed alpha
Helix 13	AB4	E	13	46	Right-handed alpha
Helix 14	AB5	X	14	53	Right-handed alpha
Helix 15	AB6	X	55	60	Right-handed 310
Helix 16	AB7	L	6	10	Right-handed 310
Helix 17	AB8	L	31	57	Right-handed alpha
Helix 18	AB9	L	70	74	Right-handed 310
Helix 19	AC1	L	79	82	Right-handed 310
Helix 20	AC2	L	83	112	Right-handed alpha
Helix 21	AC3	L	115	133	Right-handed alpha
Helix 22	AC4	L	133	139	Right-handed alpha
Helix 23	AC5	L	141	145	Right-handed 310
Helix 24	AC6	L	151	163	Right-handed alpha
Helix 25	AC7	L	164	165	Right-handed 310
Helix 26	AC8	L	166	169	Right-handed 310
Helix 27	AC9	L	170	199	Right-handed alpha
Helix 28	AD1	L	208	221	Right-handed alpha
Helix 29	AD2	L	225	251	Right-handed alpha
Helix 30	AD3	L	258	263	Right-handed alpha
Helix 31	AD4	L	269	274	Right-handed alpha
Helix 32	AD5	M	25	29	Right-handed 310
Helix 33	AD6	M	36	40	Right-handed 310
Helix 34	AD7	M	51	78	Right-handed alpha
Helix 35	AD8	M	80	87	Right-handed alpha
Helix 36	AD9	M	97	101	Right-handed 310
Helix 37	AE1	M	106	109	Right-handed 310
Helix 38	AE2	M	110	138	Right-handed alpha
Helix 39	AE3	M	142	160	Right-handed alpha
Helix 40	AE4	M	160	167	Right-handed alpha
Helix 41	AE5	M	168	172	Right-handed 310
Helix 42	AE6	M	176	191	Right-handed alpha
Helix 43	AE7	M	193	196	Right-handed 310
Helix 44	AE8	M	197	224	Right-handed alpha
Helix 45	AE9	M	225	228	Right-handed 310
Helix 46	AF1	M	231	238	Right-handed alpha
Helix 47	AF2	M	240	255	Right-handed alpha
Helix 48	AF3	M	261	285	Right-handed alpha
Helix 49	AF4	M	291	299	Right-handed alpha
Helix 50	AF5	H	12	35	Right-handed alpha
Helix 51	AF6	H	76	83	Right-handed alpha
Helix 52	AF7	H	106	111	Right-handed alpha
Helix 53	AF8	H	112	116	Right-handed 310
Helix 54	AF9	H	138	140	Right-handed 310
Helix 55	AG1	H	196	198	Right-handed 310
Helix 56	AG2	H	211	216	Right-handed alpha
Helix 57	AG3	H	228	241	Right-handed alpha
Helix 58	AG4	d	3	10	Right-handed 310
Helix 59	AG5	d	12	38	Right-handed alpha
Helix 60	AG6	d	42	52	Right-handed alpha
Helix 61	AG7	B	13	46	Right-handed alpha
Helix 62	AG8	t	13	38	Right-handed alpha
Helix 63	AG9	t	39	41	Right-handed 310
Helix 64	AH1	t	42	52	Right-handed alpha
Helix 65	AH2	S	14	46	Right-handed alpha
Helix 66	AH3	T	14	46	Right-handed alpha
Helix 67	AH4	s	13	38	Right-handed alpha
Helix 68	AH5	s	42	52	Right-handed alpha
Helix 69	AH6	U	21	45	Right-handed alpha
Helix 70	AH7	u	16	38	Right-handed alpha
Helix 71	AH8	u	42	51	Right-handed alpha
Helix 72	AH9	r	13	38	Right-handed alpha
Helix 73	AI1	r	42	52	Right-handed alpha
Helix 74	AI2	O	13	46	Right-handed alpha
Helix 75	AI3	R	13	46	Right-handed alpha
Helix 76	AI4	o	6	11	Right-handed alpha
Helix 77	AI5	o	12	38	Right-handed alpha
Helix 78	AI6	o	42	52	Right-handed alpha
Helix 79	AI7	n	2	10	Right-handed 310
Helix 80	AI8	n	12	38	Right-handed alpha
Helix 81	AI9	n	42	52	Right-handed alpha
Helix 82	AJ1	K	13	46	Right-handed alpha
Helix 83	AJ2	N	13	46	Right-handed alpha
Helix 84	AJ3	k	3	10	Right-handed 310
Helix 85	AJ4	k	12	37	Right-handed alpha
Helix 86	AJ5	k	42	52	Right-handed alpha
Helix 87	AJ6	j	3	10	Right-handed 310
Helix 88	AJ7	j	12	38	Right-handed alpha
Helix 89	AJ8	j	42	52	Right-handed alpha
Helix 90	AJ9	I	13	46	Right-handed alpha
Helix 91	AK1	J	13	46	Right-handed alpha
Helix 92	AK2	i	3	10	Right-handed 310
Helix 93	AK3	i	12	38	Right-handed alpha
Helix 94	AK4	i	42	52	Right-handed alpha
Helix 95	AK5	g	3	10	Right-handed 310
Helix 96	AK6	g	12	38	Right-handed alpha
Helix 97	AK7	g	42	52	Right-handed alpha
Helix 98	AK8	F	13	46	Right-handed alpha
Helix 99	AK9	G	13	46	Right-handed alpha
Helix 100	AL1	f	3	10	Right-handed 310
Helix 101	AL2	f	12	38	Right-handed alpha
Helix 102	AL3	f	39	41	Right-handed 310
Helix 103	AL4	f	42	52	Right-handed alpha

There are 9 sheets in PDB entry 8B64. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	25	26	first strand
Strand 2	L	29	30	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	65	66	first strand
Strand 2	L	148	149	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	10	13	first strand
Strand 2	H	143	147	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	33	34	first strand
Strand 2	M	45	46	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	5	7	first strand
Strand 2	H	10	11	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	63	65	first strand
Strand 2	H	71	73	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	90	92	first strand
Strand 2	H	101	103	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	134	136	first strand
Strand 2	H	162	172	anti-parallel
Strand 3	H	177	185	anti-parallel
Strand 4	H	190	194	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	134	136	first strand
Strand 2	H	162	172	anti-parallel
Strand 3	H	154	156	anti-parallel
Strand 4	H	205	206	parallel
Strand 5	H	199	200	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8B64

Analysis of interatomic Contacts of Structural Units in PDB entry:
8B64