Analysis of interatomic Contacts of Structural Units in PDB entry:
8B68


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8B68 entry

There are 4 chains in PDB entry 8B68 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 9ALA 121
A
 ALA 123PRO 299
B
 THR 9ALA 121
B
 ALA 123PRO 299
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 8B68. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 25Right-handed 310
Helix 2
AA2
A
26 30Right-handed 310
Helix 3
AA3
A
32 35Right-handed 310
Helix 4
AA4
A
43 54Right-handed alpha
Helix 5
AA5
A
64 68Right-handed 310
Helix 6
AA6
A
69 74Right-handed alpha
Helix 7
AA7
A
77 87Right-handed alpha
Helix 8
AA8
A
89 99Right-handed alpha
Helix 9
AA9
A
100 102Right-handed 310
Helix 10
AB1
A
115 122Right-handed alpha
Helix 11
AB2
A
123 127Right-handed 310
Helix 12
AB3
A
147 160Right-handed alpha
Helix 13
AB4
A
170 174Right-handed 310
Helix 14
AB5
A
201 205Right-handed 310
Helix 15
AB6
A
219 228Right-handed alpha
Helix 16
AB7
A
237 248Right-handed alpha
Helix 17
AB8
A
266 279Right-handed alpha
Helix 18
AB9
A
284 296Right-handed alpha
Helix 19
AC1
B
21 25Right-handed 310
Helix 20
AC2
B
26 30Right-handed 310
Helix 21
AC3
B
32 35Right-handed 310
Helix 22
AC4
B
43 54Right-handed alpha
Helix 23
AC5
B
64 75Right-handed 310
Helix 24
AC6
B
77 87Right-handed alpha
Helix 25
AC7
B
89 103Right-handed alpha
Helix 26
AC8
B
115 123Right-handed alpha
Helix 27
AC9
B
124 127Right-handed 310
Helix 28
AD1
B
147 160Right-handed alpha
Helix 29
AD2
B
170 174Right-handed 310
Helix 30
AD3
B
201 205Right-handed 310
Helix 31
AD4
B
219 228Right-handed alpha
Helix 32
AD5
B
237 248Right-handed alpha
Helix 33
AD6
B
266 280Right-handed alpha
Helix 34
AD7
B
284 296Right-handed alpha
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There are 6 sheets in PDB entry 8B68. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 109first strand
Strand 2
A
58 63parallel
Strand 3
A
12 16parallel
Strand 4
A
133 137parallel
Strand 5
A
209 218anti-parallel
Strand 6
A
178 184anti-parallel
Strand 7
A
190 198anti-parallel
Strand 8
A
252 257anti-parallel
Strand 9
A
162 168parallel
Strand 10
A
209 218anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 38first strand
Strand 2
A
41 42anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 144first strand
Strand 2
A
260 263anti-parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
104 109first strand
Strand 2
B
58 63parallel
Strand 3
B
12 16parallel
Strand 4
B
133 137parallel
Strand 5
B
209 218anti-parallel
Strand 6
B
178 184anti-parallel
Strand 7
B
190 198anti-parallel
Strand 8
B
252 257anti-parallel
Strand 9
B
162 168parallel
Strand 10
B
209 218anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 38first strand
Strand 2
B
41 42anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
141 144first strand
Strand 2
B
260 263anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il