Analysis of interatomic Contacts of Structural Units in PDB entry:
8B6K

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8B6K entry

There are 4 chains in PDB entry 8B6K (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 30	ALA 1185
P	T 1	T 10
T	T 2	A 16
B	ALA 31	PHE 139

There are 87 helices in PDB entry 8B6K. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	30	50	Right-handed alpha
Helix 2	AA2	A	145	147	Right-handed 310
Helix 3	AA3	A	148	160	Right-handed alpha
Helix 4	AA4	A	179	183	Right-handed 310
Helix 5	AA5	A	195	215	Right-handed alpha
Helix 6	AA6	A	248	257	Right-handed alpha
Helix 7	AA7	A	354	370	Right-handed alpha
Helix 8	AA8	A	382	393	Right-handed alpha
Helix 9	AA9	A	397	403	Right-handed alpha
Helix 10	AB1	A	422	429	Right-handed alpha
Helix 11	AB2	A	433	437	Right-handed 310
Helix 12	AB3	A	438	447	Right-handed alpha
Helix 13	AB4	A	455	457	Right-handed 310
Helix 14	AB5	A	458	463	Right-handed alpha
Helix 15	AB6	A	466	488	Right-handed alpha
Helix 16	AB7	A	488	498	Right-handed alpha
Helix 17	AB8	A	503	510	Right-handed alpha
Helix 18	AB9	A	511	527	Right-handed alpha
Helix 19	AC1	A	577	598	Right-handed alpha
Helix 20	AC2	A	609	627	Right-handed alpha
Helix 21	AC3	A	643	652	Right-handed alpha
Helix 22	AC4	A	655	659	Right-handed 310
Helix 23	AC5	A	693	706	Right-handed alpha
Helix 24	AC6	A	727	747	Right-handed alpha
Helix 25	AC7	A	768	797	Right-handed alpha
Helix 26	AC8	A	802	833	Right-handed alpha
Helix 27	AC9	A	834	836	Right-handed 310
Helix 28	AD1	A	843	869	Right-handed alpha
Helix 29	AD2	A	905	918	Right-handed alpha
Helix 30	AD3	A	993	1004	Right-handed alpha
Helix 31	AD4	A	1005	1008	Right-handed 310
Helix 32	AD5	A	1011	1032	Right-handed alpha
Helix 33	AD6	A	1038	1046	Right-handed alpha
Helix 34	AD7	A	1055	1060	Right-handed 310
Helix 35	AD8	A	1064	1078	Right-handed alpha
Helix 36	AD9	A	1079	1082	Right-handed 310
Helix 37	AE1	A	1110	1114	Right-handed 310
Helix 38	AE2	A	1115	1128	Right-handed alpha
Helix 39	AE3	A	1136	1141	Right-handed alpha
Helix 40	AE4	A	1142	1158	Right-handed alpha
Helix 41	AE5	A	1158	1165	Right-handed alpha
Helix 42	AE6	A	1177	1185	Right-handed alpha
Helix 43	AE7	B	32	50	Right-handed alpha
Helix 44	AE8	B	65	69	Right-handed 310
Helix 45	AE9	B	145	147	Right-handed 310
Helix 46	AF1	B	148	160	Right-handed alpha
Helix 47	AF2	B	179	183	Right-handed 310
Helix 48	AF3	B	195	215	Right-handed alpha
Helix 49	AF4	B	248	258	Right-handed alpha
Helix 50	AF5	B	354	370	Right-handed alpha
Helix 51	AF6	B	382	394	Right-handed alpha
Helix 52	AF7	B	397	403	Right-handed alpha
Helix 53	AF8	B	422	429	Right-handed alpha
Helix 54	AF9	B	433	437	Right-handed 310
Helix 55	AG1	B	438	448	Right-handed alpha
Helix 56	AG2	B	455	457	Right-handed 310
Helix 57	AG3	B	458	463	Right-handed alpha
Helix 58	AG4	B	466	488	Right-handed alpha
Helix 59	AG5	B	488	497	Right-handed alpha
Helix 60	AG6	B	503	510	Right-handed alpha
Helix 61	AG7	B	511	527	Right-handed alpha
Helix 62	AG8	B	577	598	Right-handed alpha
Helix 63	AG9	B	603	607	Right-handed 310
Helix 64	AH1	B	611	627	Right-handed alpha
Helix 65	AH2	B	643	652	Right-handed alpha
Helix 66	AH3	B	655	659	Right-handed 310
Helix 67	AH4	B	693	706	Right-handed alpha
Helix 68	AH5	B	727	746	Right-handed alpha
Helix 69	AH6	B	768	797	Right-handed alpha
Helix 70	AH7	B	802	823	Right-handed alpha
Helix 71	AH8	B	823	834	Right-handed alpha
Helix 72	AH9	B	843	866	Right-handed alpha
Helix 73	AI1	B	905	918	Right-handed alpha
Helix 74	AI2	B	993	1003	Right-handed alpha
Helix 75	AI3	B	1004	1008	Right-handed 310
Helix 76	AI4	B	1011	1032	Right-handed alpha
Helix 77	AI5	B	1038	1046	Right-handed alpha
Helix 78	AI6	B	1055	1060	Right-handed 310
Helix 79	AI7	B	1064	1078	Right-handed alpha
Helix 80	AI8	B	1079	1083	Right-handed 310
Helix 81	AI9	B	1101	1104	Right-handed 310
Helix 82	AJ1	B	1110	1114	Right-handed 310
Helix 83	AJ2	B	1115	1128	Right-handed alpha
Helix 84	AJ3	B	1136	1141	Right-handed alpha
Helix 85	AJ4	B	1142	1158	Right-handed alpha
Helix 86	AJ5	B	1158	1165	Right-handed alpha
Helix 87	AJ6	B	1177	1184	Right-handed alpha

There are 23 sheets in PDB entry 8B6K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	134	first strand
Strand 2	A	114	123	anti-parallel
Strand 3	A	74	87	anti-parallel
Strand 4	A	264	268	anti-parallel
Strand 5	A	272	274	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	166	172	first strand
Strand 2	A	186	192	anti-parallel
Strand 3	A	138	143	anti-parallel
Strand 4	A	239	243	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	335	336	first strand
Strand 2	A	346	352	anti-parallel
Strand 3	A	318	324	parallel
Strand 4	A	308	315	anti-parallel
Strand 5	A	286	293	anti-parallel
Strand 6	A	373	376	parallel
Strand 7	A	418	421	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	404	406	first strand
Strand 2	A	412	414	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	542	543	first strand
Strand 2	A	546	553	anti-parallel
Strand 3	A	678	689	anti-parallel
Strand 4	A	752	763	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	558	560	first strand
Strand 2	A	870	875	anti-parallel
Strand 3	A	878	884	anti-parallel
Strand 4	A	634	641	anti-parallel
Strand 5	A	944	950	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	564	567	first strand
Strand 2	A	952	955	anti-parallel
Strand 3	A	969	972	anti-parallel
Strand 4	A	978	982	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	572	575	first strand
Strand 2	A	629	632	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	708	710	first strand
Strand 2	A	720	722	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	890	894	first strand
Strand 2	A	900	904	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	920	928	first strand
Strand 2	A	933	939	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	991	992	first strand
Strand 2	A	1048	1051	anti-parallel
Strand 3	A	1088	1093	anti-parallel
Strand 4	A	1106	1108	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	134	first strand
Strand 2	B	114	123	anti-parallel
Strand 3	B	75	87	anti-parallel
Strand 4	B	264	268	anti-parallel
Strand 5	B	271	274	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	166	172	first strand
Strand 2	B	186	192	anti-parallel
Strand 3	B	138	143	anti-parallel
Strand 4	B	239	243	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	335	336	first strand
Strand 2	B	346	352	anti-parallel
Strand 3	B	318	324	parallel
Strand 4	B	308	315	anti-parallel
Strand 5	B	286	293	anti-parallel
Strand 6	B	373	376	parallel
Strand 7	B	418	421	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	405	406	first strand
Strand 2	B	412	413	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	542	543	first strand
Strand 2	B	546	553	anti-parallel
Strand 3	B	678	689	anti-parallel
Strand 4	B	752	763	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	558	560	first strand
Strand 2	B	870	875	anti-parallel
Strand 3	B	878	884	anti-parallel
Strand 4	B	634	641	anti-parallel
Strand 5	B	944	950	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	564	567	first strand
Strand 2	B	952	955	anti-parallel
Strand 3	B	969	972	anti-parallel
Strand 4	B	978	982	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	572	575	first strand
Strand 2	B	629	632	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	890	894	first strand
Strand 2	B	900	904	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	920	928	first strand
Strand 2	B	933	939	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	991	992	first strand
Strand 2	B	1048	1051	anti-parallel
Strand 3	B	1088	1093	anti-parallel
Strand 4	B	1106	1108	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8B6K

Analysis of interatomic Contacts of Structural Units in PDB entry:
8B6K