Analysis of interatomic Contacts of Structural Units in PDB entry:
8B6L

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8B6L entry

There are 16 chains in PDB entry 8B6L (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 4	MET 448
B	PRO 70	TRP 90
C	MET 1	GLY 68
D	UNK 1	UNK 22
E	SER 82	GLN 239
F	ARG 22	ASP 176
G	ALA 26	GLY 183
H	ALA 25	ALA 173
I	SER 10	THR 705
J	PRO 28	MET 148
K	MET 1	GLU 37
L	MET 1	VAL 79
M	SER 4	GLY 113
N	VAL 40	MET 449
O	ALA 28	LEU 607
P	TRP 21	ALA 630

There are143 helices in PDB entry 8B6L. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	5	13	Right-handed 310
Helix 2	AA2	A	27	48	Right-handed alpha
Helix 3	AA3	A	63	69	Right-handed alpha
Helix 4	AA4	A	81	95	Right-handed alpha
Helix 5	AA5	A	98	103	Right-handed 310
Helix 6	AA6	A	105	109	Right-handed 310
Helix 7	AA7	A	110	135	Right-handed alpha
Helix 8	AA8	A	145	171	Right-handed alpha
Helix 9	AA9	A	177	197	Right-handed alpha
Helix 10	AB1	A	214	223	Right-handed alpha
Helix 11	AB2	A	225	236	Right-handed alpha
Helix 12	AB3	A	241	260	Right-handed alpha
Helix 13	AB4	A	278	283	Right-handed alpha
Helix 14	AB5	A	283	303	Right-handed alpha
Helix 15	AB6	A	317	323	Right-handed alpha
Helix 16	AB7	A	327	334	Right-handed alpha
Helix 17	AB8	A	335	351	Right-handed alpha
Helix 18	AB9	A	352	354	Right-handed 310
Helix 19	AC1	A	355	361	Right-handed alpha
Helix 20	AC2	A	363	375	Right-handed alpha
Helix 21	AC3	A	385	392	Right-handed alpha
Helix 22	AC4	A	392	397	Right-handed alpha
Helix 23	AC5	A	402	416	Right-handed alpha
Helix 24	AC6	A	419	448	Right-handed alpha
Helix 25	AC7	B	71	77	Right-handed alpha
Helix 26	AC8	B	77	83	Right-handed alpha
Helix 27	AC9	B	84	90	Right-handed alpha
Helix 28	AD1	C	2	26	Right-handed alpha
Helix 29	AD2	C	29	55	Right-handed alpha
Helix 30	AD3	C	57	62	Right-handed alpha
Helix 31	AD4	C	63	65	Right-handed 310
Helix 32	AD5	D	2	11	Right-handed alpha
Helix 33	AD6	D	12	15	Right-handed 310
Helix 34	AD7	D	16	22	Right-handed alpha
Helix 35	AD8	E	161	165	Right-handed 310
Helix 36	AD9	E	205	210	Right-handed alpha
Helix 37	AE1	E	214	231	Right-handed alpha
Helix 38	AE2	F	135	144	Right-handed alpha
Helix 39	AE3	F	148	157	Right-handed alpha
Helix 40	AE4	F	158	160	Right-handed 310
Helix 41	AE5	F	161	176	Right-handed alpha
Helix 42	AE6	G	28	37	Right-handed alpha
Helix 43	AE7	G	37	42	Right-handed alpha
Helix 44	AE8	G	43	50	Right-handed alpha
Helix 45	AE9	G	58	103	Right-handed alpha
Helix 46	AF1	G	115	124	Right-handed alpha
Helix 47	AF2	G	124	156	Right-handed alpha
Helix 48	AF3	G	157	160	Right-handed 310
Helix 49	AF4	G	161	182	Right-handed alpha
Helix 50	AF5	H	108	122	Right-handed alpha
Helix 51	AF6	H	124	128	Right-handed 310
Helix 52	AF7	H	150	173	Right-handed alpha
Helix 53	AF8	I	11	33	Right-handed alpha
Helix 54	AF9	I	35	41	Right-handed alpha
Helix 55	AG1	I	49	64	Right-handed alpha
Helix 56	AG2	I	64	70	Right-handed alpha
Helix 57	AG3	I	85	88	Right-handed 310
Helix 58	AG4	I	90	106	Right-handed alpha
Helix 59	AG5	I	111	137	Right-handed alpha
Helix 60	AG6	I	140	154	Right-handed alpha
Helix 61	AG7	I	154	159	Right-handed alpha
Helix 62	AG8	I	168	190	Right-handed alpha
Helix 63	AG9	I	191	209	Right-handed alpha
Helix 64	AH1	I	210	213	Right-handed 310
Helix 65	AH2	I	214	229	Right-handed alpha
Helix 66	AH3	I	233	252	Right-handed alpha
Helix 67	AH4	I	259	264	Right-handed alpha
Helix 68	AH5	I	267	290	Right-handed alpha
Helix 69	AH6	I	291	320	Right-handed alpha
Helix 70	AH7	I	327	335	Right-handed alpha
Helix 71	AH8	I	337	343	Right-handed alpha
Helix 72	AH9	I	343	349	Right-handed alpha
Helix 73	AI1	I	350	353	Right-handed 310
Helix 74	AI2	I	356	365	Right-handed alpha
Helix 75	AI3	I	365	381	Right-handed alpha
Helix 76	AI4	I	385	403	Right-handed alpha
Helix 77	AI5	I	406	433	Right-handed alpha
Helix 78	AI6	I	434	437	Right-handed 310
Helix 79	AI7	I	450	482	Right-handed alpha
Helix 80	AI8	I	503	516	Right-handed alpha
Helix 81	AI9	I	525	527	Right-handed 310
Helix 82	AJ1	I	528	536	Right-handed alpha
Helix 83	AJ2	I	548	561	Right-handed alpha
Helix 84	AJ3	I	562	573	Right-handed alpha
Helix 85	AJ4	I	595	606	Right-handed alpha
Helix 86	AJ5	I	607	610	Right-handed 310
Helix 87	AJ6	I	613	617	Right-handed 310
Helix 88	AJ7	I	633	636	Right-handed 310
Helix 89	AJ8	I	637	644	Right-handed alpha
Helix 90	AJ9	I	646	650	Right-handed 310
Helix 91	AK1	J	29	46	Right-handed alpha
Helix 92	AK2	J	47	55	Right-handed alpha
Helix 93	AK3	J	83	108	Right-handed alpha
Helix 94	AK4	J	113	143	Right-handed alpha
Helix 95	AK5	K	3	31	Right-handed alpha
Helix 96	AK6	K	33	37	Right-handed 310
Helix 97	AK7	L	2	6	Right-handed 310
Helix 98	AK8	L	17	43	Right-handed alpha
Helix 99	AK9	L	49	76	Right-handed alpha
Helix 100	AL1	M	5	20	Right-handed alpha
Helix 101	AL2	M	21	49	Right-handed alpha
Helix 102	AL3	M	52	77	Right-handed alpha
Helix 103	AL4	M	78	82	Right-handed 310
Helix 104	AL5	M	89	112	Right-handed alpha
Helix 105	AL6	N	54	60	Right-handed alpha
Helix 106	AL7	N	60	69	Right-handed alpha
Helix 107	AL8	N	112	122	Right-handed alpha
Helix 108	AL9	N	135	146	Right-handed alpha
Helix 109	AM1	N	183	188	Right-handed alpha
Helix 110	AM2	N	261	264	Right-handed 310
Helix 111	AM3	N	265	271	Right-handed alpha
Helix 112	AM4	N	287	300	Right-handed alpha
Helix 113	AM5	N	414	418	Right-handed 310
Helix 114	AM6	N	422	424	Right-handed 310
Helix 115	AM7	N	425	449	Right-handed alpha
Helix 116	AM8	O	92	97	Right-handed alpha
Helix 117	AM9	O	262	269	Right-handed alpha
Helix 118	AN1	O	419	421	Right-handed 310
Helix 119	AN2	O	432	459	Right-handed alpha
Helix 120	AN3	O	466	507	Right-handed alpha
Helix 121	AN4	O	508	540	Right-handed alpha
Helix 122	AN5	O	544	574	Right-handed alpha
Helix 123	AN6	O	578	607	Right-handed alpha
Helix 124	AN7	P	30	42	Right-handed alpha
Helix 125	AN8	P	47	62	Right-handed alpha
Helix 126	AN9	P	67	79	Right-handed alpha
Helix 127	AO1	P	83	97	Right-handed alpha
Helix 128	AO2	P	105	116	Right-handed alpha
Helix 129	AO3	P	121	136	Right-handed alpha
Helix 130	AO4	P	140	155	Right-handed alpha
Helix 131	AO5	P	157	169	Right-handed alpha
Helix 132	AO6	P	177	182	Right-handed alpha
Helix 133	AO7	P	183	191	Right-handed alpha
Helix 134	AO8	P	203	223	Right-handed alpha
Helix 135	AO9	P	229	241	Right-handed alpha
Helix 136	AP1	P	248	264	Right-handed alpha
Helix 137	AP2	P	281	285	Right-handed 310
Helix 138	AP3	P	464	473	Right-handed alpha
Helix 139	AP4	P	511	516	Right-handed alpha
Helix 140	AP5	P	538	549	Right-handed alpha
Helix 141	AP6	P	550	564	Right-handed alpha
Helix 142	AP7	P	573	596	Right-handed alpha
Helix 143	AP8	P	598	630	Right-handed alpha

There are 37 sheets in PDB entry 8B6L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	200	201	first strand
Strand 2	A	208	209	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	263	266	first strand
Strand 2	A	272	275	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	307	309	first strand
Strand 2	A	313	316	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	83	89	first strand
Strand 2	E	101	109	anti-parallel
Strand 3	E	150	158	anti-parallel
Strand 4	F	120	124	parallel
Strand 5	F	109	113	anti-parallel
Strand 6	F	54	60	anti-parallel
Strand 7	F	77	83	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	129	136	first strand
Strand 2	E	115	126	anti-parallel
Strand 3	E	140	146	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	129	136	first strand
Strand 2	E	115	126	anti-parallel
Strand 3	E	169	179	anti-parallel
Strand 4	E	184	194	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	23	29	first strand
Strand 2	F	40	48	anti-parallel
Strand 3	F	88	97	anti-parallel
Strand 4	F	69	73	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	34	35	first strand
Strand 2	F	129	134	parallel
Strand 3	F	101	105	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	30	37	first strand
Strand 2	H	46	56	anti-parallel
Strand 3	H	85	93	anti-parallel
Strand 4	H	78	79	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	73	76	first strand
Strand 2	H	67	70	anti-parallel
Strand 3	H	100	107	anti-parallel
Strand 4	H	132	138	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	72	73	first strand
Strand 2	I	82	83	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	490	493	first strand
Strand 2	I	499	502	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	539	540	first strand
Strand 2	I	521	523	parallel
Strand 3	I	577	581	parallel
Strand 4	I	689	694	anti-parallel
Strand 5	I	678	683	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	660	661	first strand
Strand 2	I	666	667	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	60	63	first strand
Strand 2	J	69	72	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	73	78	first strand
Strand 2	N	46	51	parallel
Strand 3	N	96	100	parallel
Strand 4	N	125	129	parallel
Strand 5	N	254	258	parallel
Strand 6	N	242	248	anti-parallel
Strand 7	N	211	216	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	87	88	first strand
Strand 2	N	91	92	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	147	149	first strand
Strand 2	N	202	204	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	155	157	first strand
Strand 2	N	222	224	anti-parallel
Strand 3	N	236	237	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	173	175	first strand
Strand 2	N	195	197	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	273	274	first strand
Strand 2	N	282	283	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	306	315	first strand
Strand 2	N	330	341	anti-parallel
Strand 3	N	344	347	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	306	315	first strand
Strand 2	N	330	341	anti-parallel
Strand 3	N	374	380	anti-parallel
Strand 4	N	369	371	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	325	326	first strand
Strand 2	N	404	411	parallel
Strand 3	N	386	392	anti-parallel
Strand 4	N	354	358	anti-parallel
Strand 5	N	362	367	anti-parallel

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There are 7 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	81	88	first strand
Strand 2	O	126	135	anti-parallel
Strand 3	O	47	57	anti-parallel
Strand 4	O	31	42	anti-parallel
Strand 5	O	168	177	parallel
Strand 6	O	197	206	anti-parallel
Strand 7	O	192	194	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	66	72	first strand
Strand 2	O	112	121	anti-parallel
Strand 3	O	100	103	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	140	141	first strand
Strand 2	O	153	157	anti-parallel
Strand 3	O	215	219	anti-parallel
Strand 4	O	182	185	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	145	146	first strand
Strand 2	O	256	257	parallel

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There are 7 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	289	294	first strand
Strand 2	O	327	337	anti-parallel
Strand 3	O	241	252	anti-parallel
Strand 4	O	225	237	anti-parallel
Strand 5	O	364	373	parallel
Strand 6	O	406	417	anti-parallel
Strand 7	O	390	397	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	280	284	first strand
Strand 2	O	312	316	anti-parallel
Strand 3	O	304	307	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	342	345	first strand
Strand 2	O	348	354	anti-parallel
Strand 3	O	423	429	anti-parallel
Strand 4	O	379	384	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	192	193	first strand
Strand 2	P	199	200	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	269	270	first strand
Strand 2	P	358	359	parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	272	275	first strand
Strand 2	P	287	293	anti-parallel
Strand 3	P	331	335	anti-parallel
Strand 4	P	326	328	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	318	324	first strand
Strand 2	P	304	312	anti-parallel
Strand 3	P	344	353	anti-parallel
Strand 4	P	362	369	anti-parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	392	395	first strand
Strand 2	P	373	384	anti-parallel
Strand 3	P	412	422	anti-parallel
Strand 4	P	459	463	anti-parallel
Strand 5	P	452	453	anti-parallel

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There are 5 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	406	409	first strand
Strand 2	P	494	504	parallel
Strand 3	P	477	486	anti-parallel
Strand 4	P	433	440	anti-parallel
Strand 5	P	446	450	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8B6L

Analysis of interatomic Contacts of Structural Units in PDB entry:
8B6L