Analysis of interatomic Contacts of Structural Units in PDB entry:
8B6S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8B6S entry

There are 4 chains in PDB entry 8B6S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 3LEU 63
A
 VAL 67ILE 529
B
 GLY 3LEU 63
B
 VAL 67ILE 529
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 8B6S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 8Right-handed 310
Helix 2
AA2
A
55 60Right-handed 310
Helix 3
AA3
A
67 71Right-handed 310
Helix 4
AA4
A
74 80Right-handed 310
Helix 5
AA5
A
81 86Right-handed alpha
Helix 6
AA6
A
155 158Right-handed 310
Helix 7
AA7
A
278 283Right-handed 310
Helix 8
AA8
A
285 290Right-handed alpha
Helix 9
AA9
A
314 329Right-handed alpha
Helix 10
AB1
A
340 353Right-handed alpha
Helix 11
AB2
A
371 375Right-handed 310
Helix 12
AB3
A
376 387Right-handed alpha
Helix 13
AB4
A
390 397Right-handed alpha
Helix 14
AB5
A
400 405Right-handed alpha
Helix 15
AB6
A
407 411Right-handed 310
Helix 16
AB7
A
416 425Right-handed alpha
Helix 17
AB8
A
426 428Right-handed 310
Helix 18
AB9
A
429 432Right-handed 310
Helix 19
AC1
A
433 443Right-handed alpha
Helix 20
AC2
A
449 466Right-handed alpha
Helix 21
AC3
A
482 493Right-handed alpha
Helix 22
AC4
A
507 512Right-handed alpha
Helix 23
AC5
A
512 526Right-handed alpha
Helix 24
AC6
B
3 8Right-handed 310
Helix 25
AC7
B
36 38Right-handed 310
Helix 26
AC8
B
55 60Right-handed 310
Helix 27
AC9
B
67 71Right-handed 310
Helix 28
AD1
B
74 80Right-handed 310
Helix 29
AD2
B
81 86Right-handed alpha
Helix 30
AD3
B
278 283Right-handed 310
Helix 31
AD4
B
285 290Right-handed alpha
Helix 32
AD5
B
314 329Right-handed alpha
Helix 33
AD6
B
340 353Right-handed alpha
Helix 34
AD7
B
371 375Right-handed 310
Helix 35
AD8
B
376 378Right-handed 310
Helix 36
AD9
B
379 387Right-handed alpha
Helix 37
AE1
B
390 397Right-handed alpha
Helix 38
AE2
B
400 405Right-handed alpha
Helix 39
AE3
B
407 411Right-handed 310
Helix 40
AE4
B
416 425Right-handed alpha
Helix 41
AE5
B
426 428Right-handed 310
Helix 42
AE6
B
429 432Right-handed 310
Helix 43
AE7
B
433 443Right-handed alpha
Helix 44
AE8
B
449 466Right-handed alpha
Helix 45
AE9
B
482 493Right-handed alpha
Helix 46
AF1
B
507 512Right-handed alpha
Helix 47
AF2
B
512 526Right-handed alpha
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There are 4 sheets in PDB entry 8B6S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 21first strand
Strand 2
A
24 35anti-parallel
Strand 3
A
40 47anti-parallel
Strand 4
A
216 226anti-parallel
Strand 5
A
198 207anti-parallel
Strand 6
A
148 154anti-parallel
Strand 7
A
159 169anti-parallel
Strand 8
A
175 186anti-parallel
Strand 9
A
91 99anti-parallel
Strand 10
A
104 114anti-parallel
Strand 11
A
117 127anti-parallel
Strand 12
A
10 21parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
247 251first strand
Strand 2
A
254 261anti-parallel
Strand 3
A
295 298anti-parallel
Strand 4
A
269 272parallel
Strand 5
A
334 339parallel
Strand 6
A
357 363parallel
Strand 7
A
470 477parallel
Strand 8
A
496 504parallel
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There are 12 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 21first strand
Strand 2
B
24 35anti-parallel
Strand 3
B
40 47anti-parallel
Strand 4
B
216 226anti-parallel
Strand 5
B
198 207anti-parallel
Strand 6
B
148 154anti-parallel
Strand 7
B
159 169anti-parallel
Strand 8
B
175 186anti-parallel
Strand 9
B
91 99anti-parallel
Strand 10
B
104 114anti-parallel
Strand 11
B
117 127anti-parallel
Strand 12
B
11 21parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
247 251first strand
Strand 2
B
254 261anti-parallel
Strand 3
B
295 298anti-parallel
Strand 4
B
269 272parallel
Strand 5
B
334 339parallel
Strand 6
B
357 363parallel
Strand 7
B
470 477parallel
Strand 8
B
496 504parallel
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