Analysis of interatomic Contacts of Structural Units in PDB entry:
8B6U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8B6U entry

There is 1 chain in PDB entry 8B6U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 2LYS 482
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 8B6U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 25Right-handed alpha
Helix 2
AA2
A
97 107Right-handed alpha
Helix 3
AA3
A
118 120Right-handed 310
Helix 4
AA4
A
121 126Right-handed alpha
Helix 5
AA5
A
127 132Right-handed alpha
Helix 6
AA6
A
157 162Right-handed 310
Helix 7
AA7
A
163 173Right-handed alpha
Helix 8
AA8
A
177 188Right-handed alpha
Helix 9
AA9
A
218 231Right-handed alpha
Helix 10
AB1
A
235 252Right-handed alpha
Helix 11
AB2
A
263 268Right-handed alpha
Helix 12
AB3
A
274 286Right-handed alpha
Helix 13
AB4
A
304 307Right-handed 310
Helix 14
AB5
A
309 323Right-handed alpha
Helix 15
AB6
A
323 331Right-handed alpha
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There are 7 sheets in PDB entry 8B6U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 13first strand
Strand 2
A
253 260parallel
Strand 3
A
195 209anti-parallel
Strand 4
A
136 151anti-parallel
Strand 5
A
81 95anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 13first strand
Strand 2
A
253 260parallel
Strand 3
A
195 209anti-parallel
Strand 4
A
290 294anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 41first strand
Strand 2
A
191 193anti-parallel
Strand 3
A
300 302anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 68first strand
Strand 2
A
71 77anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
338 347first strand
Strand 2
A
373 381anti-parallel
Strand 3
A
358 360anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
390 399first strand
Strand 2
A
424 432anti-parallel
Strand 3
A
409 410anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
441 447first strand
Strand 2
A
473 479anti-parallel
Strand 3
A
459 460anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il