Analysis of interatomic Contacts of Structural Units in PDB entry:
8B6Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8B6Z entry

There are 2 chains in PDB entry 8B6Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 4SER 445
B
 U 4601 G 4608
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 8B6Z. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 32Right-handed alpha
Helix 2
AA2
A
35 50Right-handed alpha
Helix 3
AA3
A
57 66Right-handed alpha
Helix 4
AA4
A
97 105Right-handed alpha
Helix 5
AA5
A
121 127Right-handed alpha
Helix 6
AA6
A
132 144Right-handed alpha
Helix 7
AA7
A
154 158Right-handed 310
Helix 8
AA8
A
163 182Right-handed alpha
Helix 9
AA9
A
184 188Right-handed 310
Helix 10
AB1
A
227 234Right-handed alpha
Helix 11
AB2
A
418 421Right-handed 310
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There are 5 sheets in PDB entry 8B6Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 81first strand
Strand 2
A
86 91anti-parallel
Strand 3
A
7 13parallel
Strand 4
A
111 117parallel
Strand 5
A
148 153parallel
Strand 6
A
190 192parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 216first strand
Strand 2
A
223 225anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
247 249first strand
Strand 2
A
325 328anti-parallel
Strand 3
A
277 281anti-parallel
Strand 4
A
285 294anti-parallel
Strand 5
A
307 312anti-parallel
Strand 6
A
260 266anti-parallel
Strand 7
A
252 256anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
247 249first strand
Strand 2
A
325 328anti-parallel
Strand 3
A
277 281anti-parallel
Strand 4
A
285 294anti-parallel
Strand 5
A
297 298anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
386 389first strand
Strand 2
A
366 379anti-parallel
Strand 3
A
399 406anti-parallel
Strand 4
A
337 346anti-parallel
Strand 5
A
431 443anti-parallel
Strand 6
A
423 428anti-parallel
Strand 7
A
360 363anti-parallel
Strand 8
A
366 379anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il