Analysis of interatomic Contacts of Structural Units in PDB entry:
8B76

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8B76 entry

There are 6 chains in PDB entry 8B76 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 28	THR 1186
B	ASN 28	THR 1186
C	T 1	T 10
D	T 2	A 16
P	T 1	T 10
T	T 2	A 16

There are 88 helices in PDB entry 8B76. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	28	50	Right-handed alpha
Helix 2	AA2	A	65	69	Right-handed 310
Helix 3	AA3	A	148	160	Right-handed alpha
Helix 4	AA4	A	179	183	Right-handed 310
Helix 5	AA5	A	195	215	Right-handed alpha
Helix 6	AA6	A	234	237	Right-handed 310
Helix 7	AA7	A	248	257	Right-handed alpha
Helix 8	AA8	A	354	370	Right-handed alpha
Helix 9	AA9	A	382	394	Right-handed alpha
Helix 10	AB1	A	397	403	Right-handed alpha
Helix 11	AB2	A	422	430	Right-handed alpha
Helix 12	AB3	A	433	437	Right-handed 310
Helix 13	AB4	A	438	448	Right-handed alpha
Helix 14	AB5	A	455	463	Right-handed alpha
Helix 15	AB6	A	466	488	Right-handed alpha
Helix 16	AB7	A	488	497	Right-handed alpha
Helix 17	AB8	A	503	510	Right-handed alpha
Helix 18	AB9	A	511	527	Right-handed alpha
Helix 19	AC1	A	577	598	Right-handed alpha
Helix 20	AC2	A	603	607	Right-handed 310
Helix 21	AC3	A	609	627	Right-handed alpha
Helix 22	AC4	A	643	652	Right-handed alpha
Helix 23	AC5	A	655	657	Right-handed 310
Helix 24	AC6	A	693	706	Right-handed alpha
Helix 25	AC7	A	727	747	Right-handed alpha
Helix 26	AC8	A	768	798	Right-handed alpha
Helix 27	AC9	A	802	833	Right-handed alpha
Helix 28	AD1	A	834	836	Right-handed 310
Helix 29	AD2	A	843	869	Right-handed alpha
Helix 30	AD3	A	905	918	Right-handed alpha
Helix 31	AD4	A	993	1003	Right-handed alpha
Helix 32	AD5	A	1004	1008	Right-handed 310
Helix 33	AD6	A	1011	1032	Right-handed alpha
Helix 34	AD7	A	1038	1046	Right-handed alpha
Helix 35	AD8	A	1055	1060	Right-handed 310
Helix 36	AD9	A	1064	1078	Right-handed alpha
Helix 37	AE1	A	1079	1083	Right-handed 310
Helix 38	AE2	A	1101	1104	Right-handed 310
Helix 39	AE3	A	1110	1114	Right-handed 310
Helix 40	AE4	A	1115	1128	Right-handed alpha
Helix 41	AE5	A	1136	1141	Right-handed alpha
Helix 42	AE6	A	1142	1158	Right-handed alpha
Helix 43	AE7	A	1158	1165	Right-handed alpha
Helix 44	AE8	A	1177	1186	Right-handed alpha
Helix 45	AE9	B	29	50	Right-handed alpha
Helix 46	AF1	B	65	69	Right-handed 310
Helix 47	AF2	B	148	160	Right-handed alpha
Helix 48	AF3	B	179	183	Right-handed 310
Helix 49	AF4	B	195	215	Right-handed alpha
Helix 50	AF5	B	234	237	Right-handed 310
Helix 51	AF6	B	248	257	Right-handed alpha
Helix 52	AF7	B	354	370	Right-handed alpha
Helix 53	AF8	B	382	394	Right-handed alpha
Helix 54	AF9	B	397	403	Right-handed alpha
Helix 55	AG1	B	422	430	Right-handed alpha
Helix 56	AG2	B	433	437	Right-handed 310
Helix 57	AG3	B	438	448	Right-handed alpha
Helix 58	AG4	B	455	463	Right-handed alpha
Helix 59	AG5	B	466	488	Right-handed alpha
Helix 60	AG6	B	488	497	Right-handed alpha
Helix 61	AG7	B	503	510	Right-handed alpha
Helix 62	AG8	B	511	527	Right-handed alpha
Helix 63	AG9	B	577	598	Right-handed alpha
Helix 64	AH1	B	603	607	Right-handed 310
Helix 65	AH2	B	609	627	Right-handed alpha
Helix 66	AH3	B	643	652	Right-handed alpha
Helix 67	AH4	B	655	657	Right-handed 310
Helix 68	AH5	B	693	707	Right-handed alpha
Helix 69	AH6	B	724	726	Right-handed 310
Helix 70	AH7	B	727	747	Right-handed alpha
Helix 71	AH8	B	768	797	Right-handed alpha
Helix 72	AH9	B	802	833	Right-handed alpha
Helix 73	AI1	B	834	836	Right-handed 310
Helix 74	AI2	B	843	869	Right-handed alpha
Helix 75	AI3	B	905	918	Right-handed alpha
Helix 76	AI4	B	993	1006	Right-handed alpha
Helix 77	AI5	B	1011	1032	Right-handed alpha
Helix 78	AI6	B	1038	1047	Right-handed alpha
Helix 79	AI7	B	1055	1059	Right-handed 310
Helix 80	AI8	B	1064	1078	Right-handed alpha
Helix 81	AI9	B	1079	1082	Right-handed 310
Helix 82	AJ1	B	1101	1104	Right-handed 310
Helix 83	AJ2	B	1110	1114	Right-handed 310
Helix 84	AJ3	B	1115	1128	Right-handed alpha
Helix 85	AJ4	B	1136	1141	Right-handed alpha
Helix 86	AJ5	B	1142	1158	Right-handed alpha
Helix 87	AJ6	B	1158	1165	Right-handed alpha
Helix 88	AJ7	B	1177	1186	Right-handed alpha

There are 26 sheets in PDB entry 8B76. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	134	first strand
Strand 2	A	114	123	anti-parallel
Strand 3	A	74	87	anti-parallel
Strand 4	A	264	268	anti-parallel
Strand 5	A	272	274	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	166	172	first strand
Strand 2	A	186	192	anti-parallel
Strand 3	A	138	143	anti-parallel
Strand 4	A	239	243	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	335	336	first strand
Strand 2	A	346	352	anti-parallel
Strand 3	A	318	324	parallel
Strand 4	A	308	315	anti-parallel
Strand 5	A	286	293	anti-parallel
Strand 6	A	373	376	parallel
Strand 7	A	418	421	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	405	406	first strand
Strand 2	A	412	413	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	542	543	first strand
Strand 2	A	546	553	anti-parallel
Strand 3	A	678	689	anti-parallel
Strand 4	A	752	763	anti-parallel
Strand 5	A	659	660	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	558	560	first strand
Strand 2	A	870	875	anti-parallel
Strand 3	A	878	884	anti-parallel
Strand 4	A	634	641	anti-parallel
Strand 5	A	944	950	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	564	567	first strand
Strand 2	A	952	955	anti-parallel
Strand 3	A	969	972	anti-parallel
Strand 4	A	978	982	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	572	575	first strand
Strand 2	A	629	632	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	708	710	first strand
Strand 2	A	720	722	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	890	894	first strand
Strand 2	A	900	904	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	920	928	first strand
Strand 2	A	933	939	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	991	992	first strand
Strand 2	A	1048	1049	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1051	1052	first strand
Strand 2	A	1087	1088	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1091	1093	first strand
Strand 2	A	1106	1108	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	134	first strand
Strand 2	B	114	123	anti-parallel
Strand 3	B	75	87	anti-parallel
Strand 4	B	264	268	anti-parallel
Strand 5	B	271	274	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	166	172	first strand
Strand 2	B	186	192	anti-parallel
Strand 3	B	138	143	anti-parallel
Strand 4	B	239	243	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	335	336	first strand
Strand 2	B	346	352	anti-parallel
Strand 3	B	318	324	parallel
Strand 4	B	308	315	anti-parallel
Strand 5	B	286	293	anti-parallel
Strand 6	B	373	376	parallel
Strand 7	B	418	421	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	405	406	first strand
Strand 2	B	412	413	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	542	543	first strand
Strand 2	B	546	553	anti-parallel
Strand 3	B	678	689	anti-parallel
Strand 4	B	752	763	anti-parallel
Strand 5	B	659	660	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	558	560	first strand
Strand 2	B	870	875	anti-parallel
Strand 3	B	878	884	anti-parallel
Strand 4	B	634	641	anti-parallel
Strand 5	B	944	950	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	564	567	first strand
Strand 2	B	952	955	anti-parallel
Strand 3	B	969	972	anti-parallel
Strand 4	B	978	982	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	572	575	first strand
Strand 2	B	629	632	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	708	710	first strand
Strand 2	B	720	722	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	890	894	first strand
Strand 2	B	900	904	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	920	928	first strand
Strand 2	B	933	939	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	991	992	first strand
Strand 2	B	1048	1052	anti-parallel
Strand 3	B	1087	1093	anti-parallel
Strand 4	B	1106	1108	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8B76

Analysis of interatomic Contacts of Structural Units in PDB entry:
8B76