Analysis of interatomic Contacts of Structural Units in PDB entry:
8B7F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8B7F entry

There are 2 chains in PDB entry 8B7F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 21GLY 388
B
 MET 21GLY 388
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 8B7F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 39Right-handed alpha
Helix 2
AA2
A
39 45Right-handed alpha
Helix 3
AA3
A
59 66Right-handed alpha
Helix 4
AA4
A
66 78Right-handed alpha
Helix 5
AA5
A
108 117Right-handed alpha
Helix 6
AA6
A
118 132Right-handed alpha
Helix 7
AA7
A
136 143Right-handed alpha
Helix 8
AA8
A
144 147Right-handed 310
Helix 9
AA9
A
151 168Right-handed alpha
Helix 10
AB1
A
174 178Right-handed 310
Helix 11
AB2
A
184 191Right-handed alpha
Helix 12
AB3
A
191 204Right-handed alpha
Helix 13
AB4
A
229 233Right-handed 310
Helix 14
AB5
A
239 246Right-handed 310
Helix 15
AB6
A
257 264Right-handed alpha
Helix 16
AB7
A
278 284Right-handed alpha
Helix 17
AB8
A
285 290Right-handed 310
Helix 18
AB9
A
301 313Right-handed alpha
Helix 19
AC1
A
324 332Right-handed alpha
Helix 20
AC2
A
333 335Right-handed 310
Helix 21
AC3
A
350 363Right-handed alpha
Helix 22
AC4
A
369 373Right-handed 310
Helix 23
AC5
A
374 388Right-handed alpha
Helix 24
AC6
B
24 39Right-handed alpha
Helix 25
AC7
B
39 45Right-handed alpha
Helix 26
AC8
B
59 66Right-handed alpha
Helix 27
AC9
B
66 78Right-handed alpha
Helix 28
AD1
B
108 117Right-handed alpha
Helix 29
AD2
B
118 132Right-handed alpha
Helix 30
AD3
B
136 143Right-handed alpha
Helix 31
AD4
B
144 147Right-handed 310
Helix 32
AD5
B
151 168Right-handed alpha
Helix 33
AD6
B
174 178Right-handed 310
Helix 34
AD7
B
184 191Right-handed alpha
Helix 35
AD8
B
191 204Right-handed alpha
Helix 36
AD9
B
229 233Right-handed 310
Helix 37
AE1
B
241 246Right-handed 310
Helix 38
AE2
B
257 264Right-handed alpha
Helix 39
AE3
B
278 284Right-handed alpha
Helix 40
AE4
B
285 290Right-handed 310
Helix 41
AE5
B
301 313Right-handed alpha
Helix 42
AE6
B
324 332Right-handed alpha
Helix 43
AE7
B
333 335Right-handed 310
Helix 44
AE8
B
350 363Right-handed alpha
Helix 45
AE9
B
369 373Right-handed 310
Helix 46
AF1
B
374 388Right-handed alpha
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There are 6 sheets in PDB entry 8B7F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 54first strand
Strand 2
A
96 106anti-parallel
Strand 3
A
83 90anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
235 238first strand
Strand 2
A
220 224anti-parallel
Strand 3
A
270 274anti-parallel
Strand 4
A
251 255parallel
Strand 5
A
293 297parallel
Strand 6
A
319 320parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
336 337first strand
Strand 2
A
366 367anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 54first strand
Strand 2
B
96 106anti-parallel
Strand 3
B
83 90anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
235 239first strand
Strand 2
B
219 224anti-parallel
Strand 3
B
270 274anti-parallel
Strand 4
B
251 255parallel
Strand 5
B
293 297parallel
Strand 6
B
319 320parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
336 337first strand
Strand 2
B
366 367anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il