Analysis of interatomic Contacts of Structural Units in PDB entry:
8B7V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8B7V entry

There are 3 chains in PDB entry 8B7V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 1	TRP 421
B	VAL 1	TRP 421
C	VAL 1	TRP 421

There are 12 helices in PDB entry 8B7V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	113	116	Right-handed 310
Helix 2	AA2	A	159	163	Right-handed 310
Helix 3	AA3	A	238	240	Right-handed 310
Helix 4	AA4	A	397	401	Right-handed 310
Helix 5	AA5	B	113	116	Right-handed 310
Helix 6	AA6	B	159	163	Right-handed 310
Helix 7	AA7	B	238	240	Right-handed 310
Helix 8	AA8	B	397	401	Right-handed 310
Helix 9	AA9	C	113	116	Right-handed 310
Helix 10	AB1	C	159	163	Right-handed 310
Helix 11	AB2	C	238	240	Right-handed 310
Helix 12	AB3	C	397	401	Right-handed 310

There are 12 sheets in PDB entry 8B7V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 19 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	14	first strand
Strand 2	A	40	53	anti-parallel
Strand 3	A	56	68	anti-parallel
Strand 4	A	80	89	anti-parallel
Strand 5	A	99	105	anti-parallel
Strand 6	A	124	133	anti-parallel
Strand 7	A	138	152	anti-parallel
Strand 8	A	165	182	anti-parallel
Strand 9	A	185	197	anti-parallel
Strand 10	A	211	223	anti-parallel
Strand 11	A	226	236	anti-parallel
Strand 12	A	267	279	anti-parallel
Strand 13	A	284	297	anti-parallel
Strand 14	A	303	315	anti-parallel
Strand 15	A	320	333	anti-parallel
Strand 16	A	339	352	anti-parallel
Strand 17	A	362	373	anti-parallel
Strand 18	A	407	421	anti-parallel
Strand 19	A	2	14	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	110	112	first strand
Strand 2	A	117	120	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	252	254	first strand
Strand 2	A	260	262	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	376	378	first strand
Strand 2	A	393	395	anti-parallel

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There are 19 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	14	first strand
Strand 2	B	40	53	anti-parallel
Strand 3	B	56	68	anti-parallel
Strand 4	B	80	89	anti-parallel
Strand 5	B	99	105	anti-parallel
Strand 6	B	124	133	anti-parallel
Strand 7	B	138	152	anti-parallel
Strand 8	B	165	179	anti-parallel
Strand 9	B	185	197	anti-parallel
Strand 10	B	211	223	anti-parallel
Strand 11	B	226	236	anti-parallel
Strand 12	B	267	279	anti-parallel
Strand 13	B	284	297	anti-parallel
Strand 14	B	303	317	anti-parallel
Strand 15	B	320	333	anti-parallel
Strand 16	B	339	352	anti-parallel
Strand 17	B	362	373	anti-parallel
Strand 18	B	407	421	anti-parallel
Strand 19	B	2	14	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	110	112	first strand
Strand 2	B	117	120	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	252	254	first strand
Strand 2	B	260	262	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	376	378	first strand
Strand 2	B	393	395	anti-parallel

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There are 20 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	203	204	first strand
Strand 2	C	138	153	anti-parallel
Strand 3	C	165	182	anti-parallel
Strand 4	C	185	197	anti-parallel
Strand 5	C	211	223	anti-parallel
Strand 6	C	226	236	anti-parallel
Strand 7	C	267	280	anti-parallel
Strand 8	C	284	297	anti-parallel
Strand 9	C	303	317	anti-parallel
Strand 10	C	320	333	anti-parallel
Strand 11	C	339	352	anti-parallel
Strand 12	C	362	373	anti-parallel
Strand 13	C	407	420	anti-parallel
Strand 14	C	2	14	anti-parallel
Strand 15	C	40	53	anti-parallel
Strand 16	C	56	68	anti-parallel
Strand 17	C	80	89	anti-parallel
Strand 18	C	99	105	anti-parallel
Strand 19	C	124	133	anti-parallel
Strand 20	C	138	153	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	110	112	first strand
Strand 2	C	117	120	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	252	254	first strand
Strand 2	C	260	262	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	376	379	first strand
Strand 2	C	392	395	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8B7V

Analysis of interatomic Contacts of Structural Units in PDB entry:
8B7V