Analysis of interatomic Contacts of Structural Units in PDB entry:
8B87


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8B87 entry

There are 4 chains in PDB entry 8B87 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 721ARG 815
B
 ARG 721GLU 814
C
 SER 97LEU 105
D
 SER 97LEU 105
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 6 helices in PDB entry 8B87. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
722 726Right-handed 310
Helix 2
AA2
A
767 772Right-handed alpha
Helix 3
AA3
A
792 802Right-handed alpha
Helix 4
AA4
B
722 726Right-handed 310
Helix 5
AA5
B
767 772Right-handed alpha
Helix 6
AA6
B
792 802Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 8B87. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
727 732first strand
Strand 2
A
806 812anti-parallel
Strand 3
A
779 783anti-parallel
Strand 4
A
786 787anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
727 732first strand
Strand 2
A
806 812anti-parallel
Strand 3
A
779 783anti-parallel
Strand 4
A
758 763anti-parallel
Strand 5
A
740 744anti-parallel
Strand 6
C
102 104anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
727 732first strand
Strand 2
B
806 812anti-parallel
Strand 3
B
779 783anti-parallel
Strand 4
B
786 787anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
727 732first strand
Strand 2
B
806 812anti-parallel
Strand 3
B
779 783anti-parallel
Strand 4
B
758 763anti-parallel
Strand 5
B
740 744anti-parallel
Strand 6
D
102 104anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il