Analysis of interatomic Contacts of Structural Units in PDB entry:
8B8E

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8B8E entry

There are 5 chains in PDB entry 8B8E (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 29	ASP 219
B	SER 29	ASP 219
C	SER 29	HIS 221
D	SER 29	ASP 219
E	SER 29	ASP 219

There are 10 helices in PDB entry 8B8E. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	124	129	Right-handed 310
Helix 2	AA2	A	179	189	Right-handed alpha
Helix 3	AA3	B	124	129	Right-handed 310
Helix 4	AA4	B	179	189	Right-handed alpha
Helix 5	AA5	C	124	129	Right-handed 310
Helix 6	AA6	C	179	189	Right-handed alpha
Helix 7	AA7	D	124	129	Right-handed 310
Helix 8	AA8	D	179	189	Right-handed alpha
Helix 9	AA9	E	124	129	Right-handed 310
Helix 10	AB1	E	179	189	Right-handed alpha

There are 9 sheets in PDB entry 8B8E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 18 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	38	first strand
Strand 2	A	41	47	anti-parallel
Strand 3	A	72	79	anti-parallel
Strand 4	A	195	206	anti-parallel
Strand 5	A	99	108	anti-parallel
Strand 6	A	112	120	anti-parallel
Strand 7	A	159	168	parallel
Strand 8	A	140	152	anti-parallel
Strand 9	A	130	137	anti-parallel
Strand 10	D	34	38	anti-parallel
Strand 11	D	41	47	anti-parallel
Strand 12	D	72	79	anti-parallel
Strand 13	D	195	206	anti-parallel
Strand 14	D	99	108	anti-parallel
Strand 15	D	112	120	anti-parallel
Strand 16	D	159	168	parallel
Strand 17	D	140	152	anti-parallel
Strand 18	D	130	137	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	57	first strand
Strand 2	A	62	68	anti-parallel
Strand 3	A	209	218	anti-parallel
Strand 4	A	86	96	anti-parallel
Strand 5	A	175	178	anti-parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	38	first strand
Strand 2	B	41	47	anti-parallel
Strand 3	B	72	79	anti-parallel
Strand 4	B	195	218	anti-parallel
Strand 5	B	86	108	anti-parallel
Strand 6	B	112	120	anti-parallel
Strand 7	B	159	168	parallel
Strand 8	B	140	152	anti-parallel
Strand 9	B	130	137	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	57	first strand
Strand 2	B	62	68	anti-parallel
Strand 3	B	195	218	anti-parallel
Strand 4	B	86	108	anti-parallel
Strand 5	B	175	178	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	38	first strand
Strand 2	C	41	47	anti-parallel
Strand 3	C	72	79	anti-parallel
Strand 4	C	195	218	anti-parallel
Strand 5	C	86	108	anti-parallel
Strand 6	C	112	120	anti-parallel
Strand 7	C	159	168	parallel
Strand 8	C	140	152	anti-parallel
Strand 9	C	130	137	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	57	first strand
Strand 2	C	62	68	anti-parallel
Strand 3	C	195	218	anti-parallel
Strand 4	C	86	108	anti-parallel
Strand 5	C	175	178	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	52	57	first strand
Strand 2	D	62	68	anti-parallel
Strand 3	D	209	218	anti-parallel
Strand 4	D	86	96	anti-parallel
Strand 5	D	175	178	anti-parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	34	38	first strand
Strand 2	E	41	47	anti-parallel
Strand 3	E	72	79	anti-parallel
Strand 4	E	195	218	anti-parallel
Strand 5	E	86	108	anti-parallel
Strand 6	E	112	120	anti-parallel
Strand 7	E	159	168	parallel
Strand 8	E	140	152	anti-parallel
Strand 9	E	130	137	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	52	57	first strand
Strand 2	E	62	68	anti-parallel
Strand 3	E	195	218	anti-parallel
Strand 4	E	86	108	anti-parallel
Strand 5	E	175	178	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8B8E

Analysis of interatomic Contacts of Structural Units in PDB entry:
8B8E