Analysis of interatomic Contacts of Structural Units in PDB entry:
8B8G


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8B8G entry

There are 2 chains in PDB entry 8B8G (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 45LYS 877
B
 GLN 45LYS 877
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 8B8G. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
91 109Right-handed alpha
Helix 2
AA2
A
131 143Right-handed alpha
Helix 3
AA3
A
199 204Right-handed alpha
Helix 4
AA4
A
205 219Right-handed alpha
Helix 5
AA5
A
233 240Right-handed alpha
Helix 6
AA6
A
264 273Right-handed alpha
Helix 7
AA7
A
284 291Right-handed alpha
Helix 8
AA8
A
294 327Right-handed alpha
Helix 9
AA9
A
331 338Right-handed alpha
Helix 10
AB1
A
342 346Right-handed 310
Helix 11
AB2
A
360 363Right-handed 310
Helix 12
AB3
A
364 372Right-handed alpha
Helix 13
AB4
A
376 409Right-handed alpha
Helix 14
AB5
A
420 427Right-handed alpha
Helix 15
AB6
A
448 489Right-handed alpha
Helix 16
AB7
A
504 539Right-handed alpha
Helix 17
AB8
A
543 572Right-handed alpha
Helix 18
AB9
A
601 636Right-handed alpha
Helix 19
AC1
A
648 655Right-handed alpha
Helix 20
AC2
A
664 681Right-handed alpha
Helix 21
AC3
A
682 685Right-handed 310
Helix 22
AC4
A
687 709Right-handed alpha
Helix 23
AC5
A
724 747Right-handed alpha
Helix 24
AC6
A
750 759Right-handed alpha
Helix 25
AC7
A
775 781Right-handed alpha
Helix 26
AC8
A
825 857Right-handed alpha
Helix 27
AC9
A
861 877Right-handed alpha
Helix 28
AD1
B
91 109Right-handed alpha
Helix 29
AD2
B
131 143Right-handed alpha
Helix 30
AD3
B
199 204Right-handed alpha
Helix 31
AD4
B
205 219Right-handed alpha
Helix 32
AD5
B
233 240Right-handed alpha
Helix 33
AD6
B
264 273Right-handed alpha
Helix 34
AD7
B
284 291Right-handed alpha
Helix 35
AD8
B
294 327Right-handed alpha
Helix 36
AD9
B
331 338Right-handed alpha
Helix 37
AE1
B
342 346Right-handed 310
Helix 38
AE2
B
360 363Right-handed 310
Helix 39
AE3
B
364 372Right-handed alpha
Helix 40
AE4
B
376 409Right-handed alpha
Helix 41
AE5
B
420 427Right-handed alpha
Helix 42
AE6
B
448 489Right-handed alpha
Helix 43
AE7
B
504 539Right-handed alpha
Helix 44
AE8
B
543 572Right-handed alpha
Helix 45
AE9
B
601 636Right-handed alpha
Helix 46
AF1
B
648 655Right-handed alpha
Helix 47
AF2
B
664 681Right-handed alpha
Helix 48
AF3
B
682 685Right-handed 310
Helix 49
AF4
B
687 709Right-handed alpha
Helix 50
AF5
B
724 747Right-handed alpha
Helix 51
AF6
B
750 759Right-handed alpha
Helix 52
AF7
B
775 781Right-handed alpha
Helix 53
AF8
B
825 857Right-handed alpha
Helix 54
AF9
B
861 877Right-handed alpha
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There are 4 sheets in PDB entry 8B8G. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 116first strand
Strand 2
A
123 129anti-parallel
Strand 3
A
73 78anti-parallel
Strand 4
A
244 246anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
784 785first strand
Strand 2
A
806 807anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
111 116first strand
Strand 2
B
123 129anti-parallel
Strand 3
B
73 78anti-parallel
Strand 4
B
244 246anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
784 785first strand
Strand 2
B
806 807anti-parallel
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