Analysis of interatomic Contacts of Structural Units in PDB entry:
8B8J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8B8J entry

There are 2 chains in PDB entry 8B8J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 43THR 875
B
 ASN 43THR 875
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 8B8J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
90 108Right-handed alpha
Helix 2
AA2
A
131 142Right-handed alpha
Helix 3
AA3
A
205 220Right-handed alpha
Helix 4
AA4
A
234 239Right-handed alpha
Helix 5
AA5
A
264 273Right-handed alpha
Helix 6
AA6
A
275 279Right-handed 310
Helix 7
AA7
A
284 293Right-handed alpha
Helix 8
AA8
A
293 327Right-handed alpha
Helix 9
AA9
A
331 339Right-handed alpha
Helix 10
AB1
A
364 375Right-handed alpha
Helix 11
AB2
A
376 409Right-handed alpha
Helix 12
AB3
A
447 473Right-handed alpha
Helix 13
AB4
A
474 488Right-handed alpha
Helix 14
AB5
A
504 539Right-handed alpha
Helix 15
AB6
A
543 573Right-handed alpha
Helix 16
AB7
A
600 638Right-handed alpha
Helix 17
AB8
A
648 655Right-handed alpha
Helix 18
AB9
A
662 681Right-handed alpha
Helix 19
AC1
A
687 709Right-handed alpha
Helix 20
AC2
A
724 746Right-handed alpha
Helix 21
AC3
A
749 759Right-handed alpha
Helix 22
AC4
A
762 766Right-handed 310
Helix 23
AC5
A
797 802Right-handed alpha
Helix 24
AC6
A
825 856Right-handed alpha
Helix 25
AC7
A
861 875Right-handed alpha
Helix 26
AC8
B
90 108Right-handed alpha
Helix 27
AC9
B
131 142Right-handed alpha
Helix 28
AD1
B
205 220Right-handed alpha
Helix 29
AD2
B
234 239Right-handed alpha
Helix 30
AD3
B
264 273Right-handed alpha
Helix 31
AD4
B
275 279Right-handed 310
Helix 32
AD5
B
284 293Right-handed alpha
Helix 33
AD6
B
293 327Right-handed alpha
Helix 34
AD7
B
331 339Right-handed alpha
Helix 35
AD8
B
364 375Right-handed alpha
Helix 36
AD9
B
376 409Right-handed alpha
Helix 37
AE1
B
447 473Right-handed alpha
Helix 38
AE2
B
474 488Right-handed alpha
Helix 39
AE3
B
504 539Right-handed alpha
Helix 40
AE4
B
543 573Right-handed alpha
Helix 41
AE5
B
600 638Right-handed alpha
Helix 42
AE6
B
648 655Right-handed alpha
Helix 43
AE7
B
662 681Right-handed alpha
Helix 44
AE8
B
687 709Right-handed alpha
Helix 45
AE9
B
724 746Right-handed alpha
Helix 46
AF1
B
749 759Right-handed alpha
Helix 47
AF2
B
762 766Right-handed 310
Helix 48
AF3
B
797 802Right-handed alpha
Helix 49
AF4
B
825 856Right-handed alpha
Helix 50
AF5
B
861 875Right-handed alpha
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There are 8 sheets in PDB entry 8B8J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 116first strand
Strand 2
A
124 129anti-parallel
Strand 3
A
73 77anti-parallel
Strand 4
A
244 246anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 348first strand
Strand 2
A
359 360anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
657 658first strand
Strand 2
A
711 712parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
782 785first strand
Strand 2
A
806 809anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
111 116first strand
Strand 2
B
124 129anti-parallel
Strand 3
B
73 77anti-parallel
Strand 4
B
244 246anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
347 348first strand
Strand 2
B
359 360anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
657 658first strand
Strand 2
B
711 712parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
782 785first strand
Strand 2
B
806 809anti-parallel
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