Analysis of interatomic Contacts of Structural Units in PDB entry:
8B8M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8B8M entry

There are 2 chains in PDB entry 8B8M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 43THR 875
B
 ASN 43THR 875
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 8B8M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
89 108Right-handed alpha
Helix 2
AA2
A
131 142Right-handed alpha
Helix 3
AA3
A
205 220Right-handed alpha
Helix 4
AA4
A
232 239Right-handed alpha
Helix 5
AA5
A
264 272Right-handed alpha
Helix 6
AA6
A
275 279Right-handed 310
Helix 7
AA7
A
284 293Right-handed alpha
Helix 8
AA8
A
293 327Right-handed alpha
Helix 9
AA9
A
328 330Right-handed 310
Helix 10
AB1
A
331 339Right-handed alpha
Helix 11
AB2
A
342 345Right-handed 310
Helix 12
AB3
A
364 375Right-handed alpha
Helix 13
AB4
A
376 409Right-handed alpha
Helix 14
AB5
A
420 427Right-handed alpha
Helix 15
AB6
A
446 488Right-handed alpha
Helix 16
AB7
A
504 539Right-handed alpha
Helix 17
AB8
A
543 573Right-handed alpha
Helix 18
AB9
A
601 638Right-handed alpha
Helix 19
AC1
A
648 655Right-handed alpha
Helix 20
AC2
A
664 681Right-handed alpha
Helix 21
AC3
A
687 709Right-handed alpha
Helix 22
AC4
A
724 746Right-handed alpha
Helix 23
AC5
A
749 761Right-handed alpha
Helix 24
AC6
A
775 781Right-handed alpha
Helix 25
AC7
A
796 802Right-handed alpha
Helix 26
AC8
A
825 857Right-handed alpha
Helix 27
AC9
A
861 875Right-handed alpha
Helix 28
AD1
B
90 109Right-handed alpha
Helix 29
AD2
B
131 142Right-handed alpha
Helix 30
AD3
B
205 220Right-handed alpha
Helix 31
AD4
B
234 239Right-handed alpha
Helix 32
AD5
B
264 273Right-handed alpha
Helix 33
AD6
B
275 279Right-handed 310
Helix 34
AD7
B
284 293Right-handed alpha
Helix 35
AD8
B
293 327Right-handed alpha
Helix 36
AD9
B
331 339Right-handed alpha
Helix 37
AE1
B
364 375Right-handed alpha
Helix 38
AE2
B
376 409Right-handed alpha
Helix 39
AE3
B
447 475Right-handed alpha
Helix 40
AE4
B
518 540Right-handed alpha
Helix 41
AE5
B
543 573Right-handed alpha
Helix 42
AE6
B
600 638Right-handed alpha
Helix 43
AE7
B
648 655Right-handed alpha
Helix 44
AE8
B
662 681Right-handed alpha
Helix 45
AE9
B
687 709Right-handed alpha
Helix 46
AF1
B
724 746Right-handed alpha
Helix 47
AF2
B
749 760Right-handed alpha
Helix 48
AF3
B
775 781Right-handed alpha
Helix 49
AF4
B
796 802Right-handed alpha
Helix 50
AF5
B
825 857Right-handed alpha
Helix 51
AF6
B
861 875Right-handed alpha
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There are 6 sheets in PDB entry 8B8M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 116first strand
Strand 2
A
123 129anti-parallel
Strand 3
A
73 78anti-parallel
Strand 4
A
244 246anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 148first strand
Strand 2
A
188 190anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 348first strand
Strand 2
A
359 360anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
111 116first strand
Strand 2
B
124 129anti-parallel
Strand 3
B
73 77anti-parallel
Strand 4
B
244 246anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
347 348first strand
Strand 2
B
359 360anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
657 658first strand
Strand 2
B
711 712parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il