Analysis of interatomic Contacts of Structural Units in PDB entry:
8B8Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8B8Q entry

There are 2 chains in PDB entry 8B8Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 43ARG 870
B
 ASN 43ARG 870
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 8B8Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
90 109Right-handed alpha
Helix 2
AA2
A
131 142Right-handed alpha
Helix 3
AA3
A
205 220Right-handed alpha
Helix 4
AA4
A
234 239Right-handed alpha
Helix 5
AA5
A
264 273Right-handed alpha
Helix 6
AA6
A
275 279Right-handed 310
Helix 7
AA7
A
284 292Right-handed alpha
Helix 8
AA8
A
293 327Right-handed alpha
Helix 9
AA9
A
328 330Right-handed 310
Helix 10
AB1
A
331 339Right-handed alpha
Helix 11
AB2
A
362 375Right-handed alpha
Helix 12
AB3
A
376 409Right-handed alpha
Helix 13
AB4
A
447 484Right-handed alpha
Helix 14
AB5
A
508 538Right-handed alpha
Helix 15
AB6
A
543 573Right-handed alpha
Helix 16
AB7
A
600 638Right-handed alpha
Helix 17
AB8
A
648 655Right-handed alpha
Helix 18
AB9
A
662 681Right-handed alpha
Helix 19
AC1
A
687 709Right-handed alpha
Helix 20
AC2
A
724 746Right-handed alpha
Helix 21
AC3
A
749 760Right-handed alpha
Helix 22
AC4
A
776 781Right-handed alpha
Helix 23
AC5
A
796 802Right-handed alpha
Helix 24
AC6
A
825 857Right-handed alpha
Helix 25
AC7
A
861 870Right-handed alpha
Helix 26
AC8
B
90 109Right-handed alpha
Helix 27
AC9
B
131 142Right-handed alpha
Helix 28
AD1
B
205 220Right-handed alpha
Helix 29
AD2
B
234 239Right-handed alpha
Helix 30
AD3
B
264 273Right-handed alpha
Helix 31
AD4
B
275 279Right-handed 310
Helix 32
AD5
B
284 292Right-handed alpha
Helix 33
AD6
B
293 327Right-handed alpha
Helix 34
AD7
B
331 339Right-handed alpha
Helix 35
AD8
B
362 375Right-handed alpha
Helix 36
AD9
B
376 409Right-handed alpha
Helix 37
AE1
B
447 484Right-handed alpha
Helix 38
AE2
B
508 538Right-handed alpha
Helix 39
AE3
B
543 573Right-handed alpha
Helix 40
AE4
B
600 638Right-handed alpha
Helix 41
AE5
B
648 655Right-handed alpha
Helix 42
AE6
B
662 681Right-handed alpha
Helix 43
AE7
B
687 709Right-handed alpha
Helix 44
AE8
B
724 746Right-handed alpha
Helix 45
AE9
B
749 760Right-handed alpha
Helix 46
AF1
B
776 781Right-handed alpha
Helix 47
AF2
B
797 802Right-handed alpha
Helix 48
AF3
B
825 857Right-handed alpha
Helix 49
AF4
B
861 870Right-handed alpha
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There are 4 sheets in PDB entry 8B8Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 116first strand
Strand 2
A
124 129anti-parallel
Strand 3
A
73 77anti-parallel
Strand 4
A
244 246anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
782 785first strand
Strand 2
A
806 809anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
111 116first strand
Strand 2
B
124 129anti-parallel
Strand 3
B
73 77anti-parallel
Strand 4
B
244 246anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
782 785first strand
Strand 2
B
806 809anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il