Analysis of interatomic Contacts of Structural Units in PDB entry:
8B8R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8B8R entry

There are 5 chains in PDB entry 8B8R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1PRO 287
B
 SER 10LEU 261
C
 GLY 1GLN 238
D
 MET 1ASN 69
E
 ASP 35GLY 285
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 8B8R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 37Right-handed 310
Helix 2
AA2
A
43 48Right-handed alpha
Helix 3
AA3
A
59 62Right-handed 310
Helix 4
AA4
A
63 69Right-handed alpha
Helix 5
AA5
A
100 108Right-handed alpha
Helix 6
AA6
A
159 164Right-handed 310
Helix 7
AA7
A
209 214Right-handed alpha
Helix 8
AA8
B
89 98Right-handed alpha
Helix 9
AA9
B
142 147Right-handed alpha
Helix 10
AB1
B
169 173Right-handed 310
Helix 11
AB2
B
178 185Right-handed 310
Helix 12
AB3
C
42 48Right-handed alpha
Helix 13
AB4
C
64 68Right-handed 310
Helix 14
AB5
C
98 105Right-handed alpha
Helix 15
AB6
C
144 149Right-handed alpha
Helix 16
AB7
D
35 39Right-handed 310
Helix 17
AB8
D
49 53Right-handed 310
Helix 18
AB9
E
112 116Right-handed 310
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There are 20 sheets in PDB entry 8B8R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 6first strand
Strand 2
D
3 7parallel
Strand 3
D
26 29anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 32first strand
Strand 2
C
163 168anti-parallel
Strand 3
C
114 120anti-parallel
Strand 4
C
207 216anti-parallel
Strand 5
C
51 52anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 32first strand
Strand 2
C
163 168anti-parallel
Strand 3
C
114 120anti-parallel
Strand 4
C
207 216anti-parallel
Strand 5
C
70 73anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 80first strand
Strand 2
A
232 250anti-parallel
Strand 3
A
110 127anti-parallel
Strand 4
A
192 193anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 183first strand
Strand 2
A
110 127anti-parallel
Strand 3
A
232 250anti-parallel
Strand 4
C
39 40anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 94first strand
Strand 2
A
218 223anti-parallel
Strand 3
A
141 147anti-parallel
Strand 4
A
169 173anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 18first strand
Strand 2
B
21 25anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 65first strand
Strand 2
B
239 255anti-parallel
Strand 3
B
69 71anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 65first strand
Strand 2
B
239 255anti-parallel
Strand 3
B
99 111anti-parallel
Strand 4
B
197 202anti-parallel
Strand 5
B
31 33parallel
Strand 6
D
57 58anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
153 154first strand
Strand 2
B
78 81anti-parallel
Strand 3
B
219 230anti-parallel
Strand 4
B
119 128anti-parallel
Strand 5
B
187 191anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
81 86first strand
Strand 2
C
189 199anti-parallel
Strand 3
C
127 135anti-parallel
Strand 4
C
152 157anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
177 178first strand
Strand 2
C
107 111anti-parallel
Strand 3
C
221 225anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
45 47first strand
Strand 2
E
60 65anti-parallel
Strand 3
E
78 82anti-parallel
Strand 4
E
86 87anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
70 71first strand
Strand 2
E
94 95anti-parallel
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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
107 109first strand
Strand 2
E
124 129anti-parallel
Strand 3
E
142 144anti-parallel
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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
133 135first strand
Strand 2
E
158 160anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
172 175first strand
Strand 2
E
185 190anti-parallel
Strand 3
E
201 207anti-parallel
Strand 4
E
210 213anti-parallel
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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
194 197first strand
Strand 2
E
219 222anti-parallel
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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
234 236first strand
Strand 2
E
248 253anti-parallel
Strand 3
E
264 270anti-parallel
Strand 4
E
273 276anti-parallel
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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
258 260first strand
Strand 2
E
282 284anti-parallel
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