Analysis of interatomic Contacts of Structural Units in PDB entry:
8B8V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8B8V entry

There are 2 chains in PDB entry 8B8V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 27SER 447
B
 ILE 4LEU 39
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 8B8V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
48 63Right-handed alpha
Helix 2
AA2
A
66 77Right-handed alpha
Helix 3
AA3
A
78 81Right-handed 310
Helix 4
AA4
A
104 109Right-handed 310
Helix 5
AA5
A
133 153Right-handed alpha
Helix 6
AA6
A
161 173Right-handed alpha
Helix 7
AA7
A
185 194Right-handed alpha
Helix 8
AA8
A
195 199Right-handed 310
Helix 9
AA9
A
200 217Right-handed alpha
Helix 10
AB1
A
221 223Right-handed 310
Helix 11
AB2
A
224 229Right-handed alpha
Helix 12
AB3
A
230 232Right-handed 310
Helix 13
AB4
A
236 249Right-handed alpha
Helix 14
AB5
A
252 259Right-handed alpha
Helix 15
AB6
A
264 273Right-handed alpha
Helix 16
AB7
A
284 289Right-handed 310
Helix 17
AB8
A
305 319Right-handed alpha
Helix 18
AB9
A
321 326Right-handed alpha
Helix 19
AC1
A
334 348Right-handed alpha
Helix 20
AC2
A
402 412Right-handed alpha
Helix 21
AC3
A
417 429Right-handed alpha
Helix 22
AC4
A
437 447Right-handed alpha
Helix 23
AC5
B
7 12Right-handed alpha
Helix 24
AC6
B
21 39Right-handed alpha
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There are 3 sheets in PDB entry 8B8V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 43first strand
Strand 2
A
110 113parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 84first strand
Strand 2
A
102 103anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 91first strand
Strand 2
A
94 97anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il