Analysis of interatomic Contacts of Structural Units in PDB entry:
8B9J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8B9J entry

There is 1 chain in PDB entry 8B9J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 257ARG 1158
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 8B9J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
268 283Right-handed alpha
Helix 2
AA2
A
352 371Right-handed alpha
Helix 3
AA3
A
371 382Right-handed alpha
Helix 4
AA4
A
384 400Right-handed alpha
Helix 5
AA5
A
416 428Right-handed alpha
Helix 6
AA6
A
430 433Right-handed 310
Helix 7
AA7
A
442 457Right-handed alpha
Helix 8
AA8
A
487 494Right-handed alpha
Helix 9
AA9
A
508 512Right-handed 310
Helix 10
AB1
A
513 530Right-handed alpha
Helix 11
AB2
A
544 551Right-handed alpha
Helix 12
AB3
A
570 579Right-handed alpha
Helix 13
AB4
A
583 600Right-handed alpha
Helix 14
AB5
A
620 630Right-handed alpha
Helix 15
AB6
A
636 651Right-handed alpha
Helix 16
AB7
A
662 676Right-handed alpha
Helix 17
AB8
A
695 704Right-handed alpha
Helix 18
AB9
A
718 721Right-handed 310
Helix 19
AC1
A
758 768Right-handed alpha
Helix 20
AC2
A
782 789Right-handed alpha
Helix 21
AC3
A
795 800Right-handed 310
Helix 22
AC4
A
802 812Right-handed alpha
Helix 23
AC5
A
816 823Right-handed alpha
Helix 24
AC6
A
829 842Right-handed alpha
Helix 25
AC7
A
865 879Right-handed alpha
Helix 26
AC8
A
880 892Right-handed alpha
Helix 27
AC9
A
909 914Right-handed alpha
Helix 28
AD1
A
915 919Right-handed 310
Helix 29
AD2
A
920 938Right-handed alpha
Helix 30
AD3
A
939 950Right-handed alpha
Helix 31
AD4
A
953 973Right-handed alpha
Helix 32
AD5
A
977 982Right-handed 310
Helix 33
AD6
A
994 1008Right-handed alpha
Helix 34
AD7
A
1024 1026Right-handed 310
Helix 35
AD8
A
1070 1077Right-handed alpha
Helix 36
AD9
A
1101 1125Right-handed alpha
Helix 37
AE1
A
1126 1129Right-handed 310
Helix 38
AE2
A
1133 1147Right-handed alpha
Helix 39
AE3
A
1148 1153Right-handed 310
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There are 4 sheets in PDB entry 8B9J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
263 264first strand
Strand 2
A
1096 1099parallel
Strand 3
A
1089 1092anti-parallel
Strand 4
A
1082 1084anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
472 474first strand
Strand 2
A
465 469anti-parallel
Strand 3
A
481 486parallel
Strand 4
A
435 440parallel
Strand 5
A
503 506parallel
Strand 6
A
534 539parallel
Strand 7
A
402 407parallel
Strand 8
A
556 559parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
566 569first strand
Strand 2
A
775 779parallel
Strand 3
A
731 734parallel
Strand 4
A
656 659parallel
Strand 5
A
713 716parallel
Strand 6
A
687 690parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
737 740first strand
Strand 2
A
751 756anti-parallel
Strand 3
A
1055 1056parallel
Strand 4
A
1062 1063anti-parallel
Strand 5
A
1027 1031parallel
Strand 6
A
1020 1023anti-parallel
Strand 7
A
1012 1017anti-parallel
Strand 8
A
1049 1052anti-parallel
Strand 9
A
1066 1068anti-parallel
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