Analysis of interatomic Contacts of Structural Units in PDB entry:
8B9K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8B9K entry

There are 2 chains in PDB entry 8B9K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 161ARG 1158
B
 G 1 C 46
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 8B9K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
170 182Right-handed alpha
Helix 2
AA2
A
223 242Right-handed alpha
Helix 3
AA3
A
268 282Right-handed alpha
Helix 4
AA4
A
352 371Right-handed alpha
Helix 5
AA5
A
371 384Right-handed alpha
Helix 6
AA6
A
385 388Right-handed 310
Helix 7
AA7
A
389 400Right-handed alpha
Helix 8
AA8
A
413 428Right-handed alpha
Helix 9
AA9
A
430 434Right-handed 310
Helix 10
AB1
A
442 457Right-handed alpha
Helix 11
AB2
A
487 494Right-handed alpha
Helix 12
AB3
A
513 530Right-handed alpha
Helix 13
AB4
A
544 551Right-handed alpha
Helix 14
AB5
A
570 579Right-handed alpha
Helix 15
AB6
A
610 614Right-handed 310
Helix 16
AB7
A
621 629Right-handed alpha
Helix 17
AB8
A
636 651Right-handed alpha
Helix 18
AB9
A
662 676Right-handed alpha
Helix 19
AC1
A
695 703Right-handed alpha
Helix 20
AC2
A
717 722Right-handed alpha
Helix 21
AC3
A
758 769Right-handed alpha
Helix 22
AC4
A
782 789Right-handed alpha
Helix 23
AC5
A
802 812Right-handed alpha
Helix 24
AC6
A
816 823Right-handed alpha
Helix 25
AC7
A
829 843Right-handed alpha
Helix 26
AC8
A
853 862Right-handed alpha
Helix 27
AC9
A
865 878Right-handed alpha
Helix 28
AD1
A
880 893Right-handed alpha
Helix 29
AD2
A
908 914Right-handed alpha
Helix 30
AD3
A
920 937Right-handed alpha
Helix 31
AD4
A
939 950Right-handed alpha
Helix 32
AD5
A
954 975Right-handed alpha
Helix 33
AD6
A
994 1008Right-handed alpha
Helix 34
AD7
A
1101 1110Right-handed alpha
Helix 35
AD8
A
1110 1125Right-handed alpha
Helix 36
AD9
A
1126 1129Right-handed 310
Helix 37
AE1
A
1133 1147Right-handed alpha
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There are 7 sheets in PDB entry 8B9K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 192first strand
Strand 2
A
199 206anti-parallel
Strand 3
A
215 221anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
335 336first strand
Strand 2
A
341 342anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
402 405first strand
Strand 2
A
534 538parallel
Strand 3
A
503 504parallel
Strand 4
A
436 440parallel
Strand 5
A
482 486parallel
Strand 6
A
465 469parallel
Strand 7
A
472 473anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
567 569first strand
Strand 2
A
776 778parallel
Strand 3
A
729 733parallel
Strand 4
A
655 659parallel
Strand 5
A
711 716parallel
Strand 6
A
685 689parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
737 743first strand
Strand 2
A
750 756anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1054 1056first strand
Strand 2
A
1062 1064anti-parallel
Strand 3
A
1027 1031parallel
Strand 4
A
1020 1023anti-parallel
Strand 5
A
1012 1017anti-parallel
Strand 6
A
1050 1051anti-parallel
Strand 7
A
1067 1068anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1082 1085first strand
Strand 2
A
1089 1092anti-parallel
Strand 3
A
1096 1098anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il