Analysis of interatomic Contacts of Structural Units in PDB entry:
8B9L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8B9L entry

There is 1 chain in PDB entry 8B9L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 257GLY 1152
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 8B9L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
268 282Right-handed alpha
Helix 2
AA2
A
346 350Right-handed 310
Helix 3
AA3
A
352 371Right-handed alpha
Helix 4
AA4
A
371 383Right-handed alpha
Helix 5
AA5
A
384 389Right-handed alpha
Helix 6
AA6
A
389 400Right-handed alpha
Helix 7
AA7
A
413 428Right-handed alpha
Helix 8
AA8
A
430 433Right-handed 310
Helix 9
AA9
A
442 457Right-handed alpha
Helix 10
AB1
A
486 494Right-handed alpha
Helix 11
AB2
A
495 497Right-handed 310
Helix 12
AB3
A
508 512Right-handed 310
Helix 13
AB4
A
513 530Right-handed alpha
Helix 14
AB5
A
543 550Right-handed alpha
Helix 15
AB6
A
570 579Right-handed alpha
Helix 16
AB7
A
583 598Right-handed alpha
Helix 17
AB8
A
610 614Right-handed 310
Helix 18
AB9
A
620 629Right-handed alpha
Helix 19
AC1
A
636 651Right-handed alpha
Helix 20
AC2
A
662 676Right-handed alpha
Helix 21
AC3
A
695 704Right-handed alpha
Helix 22
AC4
A
718 722Right-handed 310
Helix 23
AC5
A
758 769Right-handed alpha
Helix 24
AC6
A
782 788Right-handed alpha
Helix 25
AC7
A
795 800Right-handed 310
Helix 26
AC8
A
802 812Right-handed alpha
Helix 27
AC9
A
816 823Right-handed alpha
Helix 28
AD1
A
829 843Right-handed alpha
Helix 29
AD2
A
865 878Right-handed alpha
Helix 30
AD3
A
880 893Right-handed alpha
Helix 31
AD4
A
908 912Right-handed 310
Helix 32
AD5
A
915 919Right-handed 310
Helix 33
AD6
A
920 938Right-handed alpha
Helix 34
AD7
A
940 947Right-handed alpha
Helix 35
AD8
A
953 974Right-handed alpha
Helix 36
AD9
A
977 982Right-handed 310
Helix 37
AE1
A
994 1008Right-handed alpha
Helix 38
AE2
A
1024 1026Right-handed 310
Helix 39
AE3
A
1070 1079Right-handed alpha
Helix 40
AE4
A
1101 1125Right-handed alpha
Helix 41
AE5
A
1133 1147Right-handed alpha
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There are 4 sheets in PDB entry 8B9L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
472 473first strand
Strand 2
A
465 469anti-parallel
Strand 3
A
481 485parallel
Strand 4
A
435 439parallel
Strand 5
A
503 506parallel
Strand 6
A
534 539parallel
Strand 7
A
402 406parallel
Strand 8
A
556 558parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
567 568first strand
Strand 2
A
776 779parallel
Strand 3
A
729 734parallel
Strand 4
A
655 659parallel
Strand 5
A
713 716parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
737 738first strand
Strand 2
A
755 756anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1062 1063first strand
Strand 2
A
1027 1031parallel
Strand 3
A
1020 1023anti-parallel
Strand 4
A
1012 1017anti-parallel
Strand 5
A
1049 1051anti-parallel
Strand 6
A
1067 1068anti-parallel
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