Analysis of interatomic Contacts of Structural Units in PDB entry:
8B9M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8B9M entry

There are 2 chains in PDB entry 8B9M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 22GLN 351
B
 ALA 21GLN 351
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 8B9M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 38Right-handed 310
Helix 2
AA2
A
62 64Right-handed 310
Helix 3
AA3
A
69 84Right-handed alpha
Helix 4
AA4
A
100 114Right-handed alpha
Helix 5
AA5
A
126 135Right-handed alpha
Helix 6
AA6
A
144 146Right-handed 310
Helix 7
AA7
A
147 163Right-handed alpha
Helix 8
AA8
A
169 184Right-handed alpha
Helix 9
AA9
A
184 193Right-handed alpha
Helix 10
AB1
A
209 220Right-handed alpha
Helix 11
AB2
A
271 287Right-handed alpha
Helix 12
AB3
A
291 306Right-handed alpha
Helix 13
AB4
A
307 311Right-handed 310
Helix 14
AB5
A
322 327Right-handed 310
Helix 15
AB6
A
329 331Right-handed 310
Helix 16
AB7
A
332 340Right-handed alpha
Helix 17
AB8
A
346 350Right-handed 310
Helix 18
AB9
B
33 38Right-handed 310
Helix 19
AC1
B
62 64Right-handed 310
Helix 20
AC2
B
69 84Right-handed alpha
Helix 21
AC3
B
100 114Right-handed alpha
Helix 22
AC4
B
126 136Right-handed alpha
Helix 23
AC5
B
144 146Right-handed 310
Helix 24
AC6
B
147 163Right-handed alpha
Helix 25
AC7
B
169 184Right-handed alpha
Helix 26
AC8
B
184 193Right-handed alpha
Helix 27
AC9
B
209 220Right-handed alpha
Helix 28
AD1
B
272 287Right-handed alpha
Helix 29
AD2
B
291 306Right-handed alpha
Helix 30
AD3
B
307 311Right-handed 310
Helix 31
AD4
B
322 327Right-handed 310
Helix 32
AD5
B
329 331Right-handed 310
Helix 33
AD6
B
332 341Right-handed alpha
Helix 34
AD7
B
346 351Right-handed alpha
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There are 4 sheets in PDB entry 8B9M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 31first strand
Strand 2
B
43 45parallel
Strand 3
B
55 60anti-parallel
Strand 4
B
314 319parallel
Strand 5
B
199 203parallel
Strand 6
B
225 232parallel
Strand 7
B
266 271parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
266 270first strand
Strand 2
A
225 231parallel
Strand 3
A
199 203parallel
Strand 4
A
314 319parallel
Strand 5
A
55 60parallel
Strand 6
A
43 45anti-parallel
Strand 7
B
30 31parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 143first strand
Strand 2
A
116 122parallel
Strand 3
A
93 96parallel
Strand 4
A
166 168parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
139 143first strand
Strand 2
B
116 122parallel
Strand 3
B
93 96parallel
Strand 4
B
166 168parallel
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