Analysis of interatomic Contacts of Structural Units in PDB entry:
8B9N


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8B9N entry

There are 6 chains in PDB entry 8B9N (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 285
B
 C 1 A 3
B
 G 13 C 15
C
 MET 1LEU 285
D
 A 402 A 402
D
 G 409 C 411
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 8B9N. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 18Right-handed alpha
Helix 2
AA2
A
141 152Right-handed alpha
Helix 3
AA3
A
153 155Right-handed 310
Helix 4
AA4
A
162 172Right-handed alpha
Helix 5
AA5
A
177 183Right-handed alpha
Helix 6
AA6
A
192 203Right-handed alpha
Helix 7
AA7
A
210 214Right-handed 310
Helix 8
AA8
A
215 240Right-handed alpha
Helix 9
AA9
A
242 246Right-handed 310
Helix 10
AB1
C
3 18Right-handed alpha
Helix 11
AB2
C
141 152Right-handed alpha
Helix 12
AB3
C
153 155Right-handed 310
Helix 13
AB4
C
162 172Right-handed alpha
Helix 14
AB5
C
177 184Right-handed alpha
Helix 15
AB6
C
192 204Right-handed alpha
Helix 16
AB7
C
210 214Right-handed 310
Helix 17
AB8
C
215 240Right-handed alpha
Helix 18
AB9
C
242 247Right-handed 310
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There are 4 sheets in PDB entry 8B9N. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 28first strand
Strand 2
A
120 124anti-parallel
Strand 3
A
128 140anti-parallel
Strand 4
A
91 105anti-parallel
Strand 5
A
83 88anti-parallel
Strand 6
A
76 80anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
263 267first strand
Strand 2
A
272 276anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
24 28first strand
Strand 2
C
120 124anti-parallel
Strand 3
C
128 140anti-parallel
Strand 4
C
91 105anti-parallel
Strand 5
C
83 88anti-parallel
Strand 6
C
76 80anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
263 267first strand
Strand 2
C
272 276anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il