Analysis of interatomic Contacts of Structural Units in PDB entry:
8B9W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8B9W entry

There are 2 chains in PDB entry 8B9W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 23ILE 351
B
 GLU 24GLU 350
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 8B9W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
34 39Right-handed 310
Helix 2
AA2
A
63 65Right-handed 310
Helix 3
AA3
A
70 85Right-handed alpha
Helix 4
AA4
A
101 115Right-handed alpha
Helix 5
AA5
A
127 136Right-handed alpha
Helix 6
AA6
A
145 147Right-handed 310
Helix 7
AA7
A
148 164Right-handed alpha
Helix 8
AA8
A
176 185Right-handed alpha
Helix 9
AA9
A
185 194Right-handed alpha
Helix 10
AB1
A
208 221Right-handed alpha
Helix 11
AB2
A
236 240Right-handed 310
Helix 12
AB3
A
261 265Right-handed 310
Helix 13
AB4
A
272 288Right-handed alpha
Helix 14
AB5
A
292 308Right-handed alpha
Helix 15
AB6
A
309 312Right-handed 310
Helix 16
AB7
A
323 328Right-handed 310
Helix 17
AB8
A
330 332Right-handed 310
Helix 18
AB9
A
333 342Right-handed alpha
Helix 19
AC1
B
34 39Right-handed 310
Helix 20
AC2
B
63 65Right-handed 310
Helix 21
AC3
B
70 85Right-handed alpha
Helix 22
AC4
B
101 115Right-handed alpha
Helix 23
AC5
B
127 136Right-handed alpha
Helix 24
AC6
B
145 147Right-handed 310
Helix 25
AC7
B
148 164Right-handed alpha
Helix 26
AC8
B
176 185Right-handed alpha
Helix 27
AC9
B
185 194Right-handed alpha
Helix 28
AD1
B
208 221Right-handed alpha
Helix 29
AD2
B
261 265Right-handed 310
Helix 30
AD3
B
272 288Right-handed alpha
Helix 31
AD4
B
292 308Right-handed alpha
Helix 32
AD5
B
309 312Right-handed 310
Helix 33
AD6
B
323 328Right-handed 310
Helix 34
AD7
B
330 332Right-handed 310
Helix 35
AD8
B
333 341Right-handed alpha
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There are 4 sheets in PDB entry 8B9W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 32first strand
Strand 2
B
44 46parallel
Strand 3
B
56 61anti-parallel
Strand 4
B
315 320parallel
Strand 5
B
200 204parallel
Strand 6
B
226 232parallel
Strand 7
B
267 271parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
267 271first strand
Strand 2
A
226 232parallel
Strand 3
A
200 204parallel
Strand 4
A
315 320parallel
Strand 5
A
56 61parallel
Strand 6
A
44 46anti-parallel
Strand 7
B
31 32parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 144first strand
Strand 2
A
117 123parallel
Strand 3
A
94 98parallel
Strand 4
A
167 169parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
140 144first strand
Strand 2
B
117 123parallel
Strand 3
B
94 98parallel
Strand 4
B
167 169parallel
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