Analysis of interatomic Contacts of Structural Units in PDB entry:
8B9X


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8B9X entry

There are 2 chains in PDB entry 8B9X (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0PHE 255
B
 GLY 0ALA 254
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 26 helices in PDB entry 8B9X. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 20Right-handed alpha
Helix 2
AA2
A
25 32Right-handed alpha
Helix 3
AA3
A
35 49Right-handed alpha
Helix 4
AA4
A
66 81Right-handed alpha
Helix 5
AA5
A
85 97Right-handed alpha
Helix 6
AA6
A
101 115Right-handed alpha
Helix 7
AA7
A
131 146Right-handed alpha
Helix 8
AA8
A
152 160Right-handed alpha
Helix 9
AA9
A
163 168Right-handed alpha
Helix 10
AB1
A
169 177Right-handed alpha
Helix 11
AB2
A
190 208Right-handed alpha
Helix 12
AB3
A
212 220Right-handed alpha
Helix 13
AB4
A
222 232Right-handed alpha
Helix 14
AB5
B
3 20Right-handed alpha
Helix 15
AB6
B
25 32Right-handed alpha
Helix 16
AB7
B
35 49Right-handed alpha
Helix 17
AB8
B
66 81Right-handed alpha
Helix 18
AB9
B
85 97Right-handed alpha
Helix 19
AC1
B
101 115Right-handed alpha
Helix 20
AC2
B
131 146Right-handed alpha
Helix 21
AC3
B
152 160Right-handed alpha
Helix 22
AC4
B
163 168Right-handed alpha
Helix 23
AC5
B
169 177Right-handed alpha
Helix 24
AC6
B
190 208Right-handed alpha
Helix 25
AC7
B
212 220Right-handed alpha
Helix 26
AC8
B
222 232Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 8B9X. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 24first strand
Strand 2
A
61 64anti-parallel
Strand 3
A
54 56anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 84first strand
Strand 2
A
128 130anti-parallel
Strand 3
A
121 122anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 151first strand
Strand 2
A
186 189anti-parallel
Strand 3
A
180 183anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 211first strand
Strand 2
A
248 252anti-parallel
Strand 3
A
240 244anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 24first strand
Strand 2
B
61 64anti-parallel
Strand 3
B
54 56anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
82 84first strand
Strand 2
B
128 130anti-parallel
Strand 3
B
121 122anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
149 151first strand
Strand 2
B
186 189anti-parallel
Strand 3
B
180 183anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
209 211first strand
Strand 2
B
248 252anti-parallel
Strand 3
B
240 244anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il