Analysis of interatomic Contacts of Structural Units in PDB entry:
8BA1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8BA1 entry

There are 2 chains in PDB entry 8BA1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 449ASP 567
B
 MET 524ILE 639
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 8BA1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
484 488Right-handed alpha
Helix 2
AA2
A
508 520Right-handed alpha
Helix 3
AA3
A
551 567Right-handed alpha
Helix 4
AA4
B
536 541Right-handed 310
Helix 5
AA5
B
578 588Right-handed alpha
Helix 6
AA6
B
624 635Right-handed alpha
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There are 3 sheets in PDB entry 8BA1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
544 546first strand
Strand 2
B
549 559anti-parallel
Strand 3
B
562 568anti-parallel
Strand 4
B
530 534parallel
Strand 5
A
457 460anti-parallel
Strand 6
A
479 483parallel
Strand 7
A
466 474anti-parallel
Strand 8
B
549 559anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
493 494first strand
Strand 2
B
572 575anti-parallel
Strand 3
B
636 639anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
524 526first strand
Strand 2
A
529 532anti-parallel
Strand 3
A
535 540anti-parallel
Strand 4
A
543 548anti-parallel
Strand 5
A
496 504anti-parallel
Strand 6
B
614 618parallel
Strand 7
B
607 611anti-parallel
Strand 8
B
599 602anti-parallel
Strand 9
B
593 596anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il