Analysis of interatomic Contacts of Structural Units in PDB entry:
8BAD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8BAD entry

There are 2 chains in PDB entry 8BAD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 5SER 354
B
 MET 5THR 355
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 8BAD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 30Right-handed 310
Helix 2
AA2
A
46 49Right-handed 310
Helix 3
AA3
A
57 59Right-handed 310
Helix 4
AA4
A
76 78Right-handed 310
Helix 5
AA5
A
94 97Right-handed 310
Helix 6
AA6
A
124 126Right-handed 310
Helix 7
AA7
A
142 145Right-handed 310
Helix 8
AA8
A
195 197Right-handed 310
Helix 9
AA9
A
205 213Right-handed alpha
Helix 10
AB1
A
247 259Right-handed alpha
Helix 11
AB2
A
272 275Right-handed 310
Helix 12
AB3
A
277 285Right-handed alpha
Helix 13
AB4
B
28 30Right-handed 310
Helix 14
AB5
B
46 49Right-handed 310
Helix 15
AB6
B
57 59Right-handed 310
Helix 16
AB7
B
76 78Right-handed 310
Helix 17
AB8
B
94 97Right-handed 310
Helix 18
AB9
B
124 126Right-handed 310
Helix 19
AC1
B
142 145Right-handed 310
Helix 20
AC2
B
195 197Right-handed 310
Helix 21
AC3
B
205 213Right-handed alpha
Helix 22
AC4
B
247 259Right-handed alpha
Helix 23
AC5
B
272 275Right-handed 310
Helix 24
AC6
B
277 285Right-handed alpha
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There are 16 sheets in PDB entry 8BAD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 65first strand
Strand 2
A
51 55anti-parallel
Strand 3
A
11 17anti-parallel
Strand 4
A
147 154anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 26first strand
Strand 2
A
37 40anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 74first strand
Strand 2
A
85 88anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 103first strand
Strand 2
A
109 113anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 122first strand
Strand 2
A
133 136anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 193first strand
Strand 2
A
215 232anti-parallel
Strand 3
A
313 327anti-parallel
Strand 4
A
338 351anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 244first strand
Strand 2
A
299 306anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 262first strand
Strand 2
A
268 270anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 65first strand
Strand 2
B
51 55anti-parallel
Strand 3
B
11 17anti-parallel
Strand 4
B
147 154anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
23 26first strand
Strand 2
B
37 40anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
71 74first strand
Strand 2
B
85 88anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
99 103first strand
Strand 2
B
109 113anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
119 122first strand
Strand 2
B
133 136anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
185 193first strand
Strand 2
B
215 232anti-parallel
Strand 3
B
313 327anti-parallel
Strand 4
B
333 351anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
237 244first strand
Strand 2
B
299 306anti-parallel
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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
260 262first strand
Strand 2
B
268 270anti-parallel
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