Analysis of interatomic Contacts of Structural Units in PDB entry:
8BAH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8BAH entry

There are 3 chains in PDB entry 8BAH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	ARG 400
B	THR 3	ARG 400
C	LEU 655	HIS 712

There are 33 helices in PDB entry 8BAH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	8	Right-handed alpha
Helix 2	AA2	A	34	50	Right-handed alpha
Helix 3	AA3	A	68	84	Right-handed alpha
Helix 4	AA4	A	96	101	Right-handed alpha
Helix 5	AA5	A	109	113	Right-handed 310
Helix 6	AA6	A	127	131	Right-handed 310
Helix 7	AA7	A	139	148	Right-handed alpha
Helix 8	AA8	A	185	195	Right-handed alpha
Helix 9	AA9	A	206	210	Right-handed 310
Helix 10	AB1	A	230	234	Right-handed 310
Helix 11	AB2	A	275	280	Right-handed alpha
Helix 12	AB3	A	315	317	Right-handed 310
Helix 13	AB4	A	327	353	Right-handed alpha
Helix 14	AB5	A	377	383	Right-handed alpha
Helix 15	AB6	A	384	386	Right-handed 310
Helix 16	AB7	A	391	394	Right-handed 310
Helix 17	AB8	B	4	8	Right-handed alpha
Helix 18	AB9	B	34	50	Right-handed alpha
Helix 19	AC1	B	68	84	Right-handed alpha
Helix 20	AC2	B	96	102	Right-handed alpha
Helix 21	AC3	B	109	113	Right-handed 310
Helix 22	AC4	B	127	131	Right-handed 310
Helix 23	AC5	B	139	148	Right-handed alpha
Helix 24	AC6	B	185	195	Right-handed alpha
Helix 25	AC7	B	206	210	Right-handed 310
Helix 26	AC8	B	230	234	Right-handed 310
Helix 27	AC9	B	275	280	Right-handed alpha
Helix 28	AD1	B	315	317	Right-handed 310
Helix 29	AD2	B	327	352	Right-handed alpha
Helix 30	AD3	B	377	383	Right-handed alpha
Helix 31	AD4	B	384	386	Right-handed 310
Helix 32	AD5	B	391	394	Right-handed 310
Helix 33	AD6	C	704	706	Right-handed 310

There are 11 sheets in PDB entry 8BAH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	152	first strand
Strand 2	A	122	124	parallel
Strand 3	A	54	57	parallel
Strand 4	A	13	18	parallel
Strand 5	A	283	290	anti-parallel
Strand 6	A	293	300	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	93	first strand
Strand 2	A	167	171	anti-parallel
Strand 3	A	174	181	anti-parallel
Strand 4	A	211	216	parallel
Strand 5	A	240	243	parallel
Strand 6	A	262	265	parallel
Strand 7	A	250	255	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	162	164	first strand
Strand 2	A	198	200	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	202	203	first strand
Strand 2	C	659	660	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	307	313	first strand
Strand 2	A	362	368	parallel
Strand 3	A	396	399	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	152	first strand
Strand 2	B	122	124	parallel
Strand 3	B	54	57	parallel
Strand 4	B	13	18	parallel
Strand 5	B	283	290	anti-parallel
Strand 6	B	293	295	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	152	first strand
Strand 2	B	122	124	parallel
Strand 3	B	54	57	parallel
Strand 4	B	13	18	parallel
Strand 5	B	283	290	anti-parallel
Strand 6	B	298	300	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	93	first strand
Strand 2	B	167	171	anti-parallel
Strand 3	B	174	181	anti-parallel
Strand 4	B	211	216	parallel
Strand 5	B	240	243	parallel
Strand 6	B	262	265	parallel
Strand 7	B	250	255	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	162	163	first strand
Strand 2	B	198	199	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	201	203	first strand
Strand 2	C	708	710	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	307	313	first strand
Strand 2	B	362	368	parallel
Strand 3	B	396	399	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8BAH

Analysis of interatomic Contacts of Structural Units in PDB entry:
8BAH