Analysis of interatomic Contacts of Structural Units in PDB entry:
8BAM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8BAM entry

There are 2 chains in PDB entry 8BAM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 2	LEU 526
B	THR 2	LEU 526

There are 48 helices in PDB entry 8BAM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	26	Right-handed alpha
Helix 2	AA2	A	33	39	Right-handed alpha
Helix 3	AA3	A	62	77	Right-handed alpha
Helix 4	AA4	A	130	141	Right-handed alpha
Helix 5	AA5	A	156	163	Right-handed alpha
Helix 6	AA6	A	173	177	Right-handed alpha
Helix 7	AA7	A	194	198	Right-handed 310
Helix 8	AA8	A	215	220	Right-handed 310
Helix 9	AA9	A	250	252	Right-handed 310
Helix 10	AB1	A	253	266	Right-handed alpha
Helix 11	AB2	A	280	288	Right-handed alpha
Helix 12	AB3	A	289	293	Right-handed 310
Helix 13	AB4	A	301	313	Right-handed alpha
Helix 14	AB5	A	326	342	Right-handed alpha
Helix 15	AB6	A	357	359	Right-handed 310
Helix 16	AB7	A	360	370	Right-handed alpha
Helix 17	AB8	A	376	384	Right-handed 310
Helix 18	AB9	A	400	418	Right-handed alpha
Helix 19	AC1	A	445	466	Right-handed alpha
Helix 20	AC2	A	474	476	Right-handed 310
Helix 21	AC3	A	477	485	Right-handed alpha
Helix 22	AC4	A	486	504	Right-handed alpha
Helix 23	AC5	A	512	516	Right-handed 310
Helix 24	AC6	A	518	522	Right-handed 310
Helix 25	AC7	B	10	26	Right-handed alpha
Helix 26	AC8	B	33	39	Right-handed alpha
Helix 27	AC9	B	62	77	Right-handed alpha
Helix 28	AD1	B	130	141	Right-handed alpha
Helix 29	AD2	B	156	163	Right-handed alpha
Helix 30	AD3	B	173	177	Right-handed alpha
Helix 31	AD4	B	194	198	Right-handed 310
Helix 32	AD5	B	215	220	Right-handed 310
Helix 33	AD6	B	250	252	Right-handed 310
Helix 34	AD7	B	253	266	Right-handed alpha
Helix 35	AD8	B	280	286	Right-handed alpha
Helix 36	AD9	B	289	293	Right-handed 310
Helix 37	AE1	B	301	313	Right-handed alpha
Helix 38	AE2	B	326	342	Right-handed alpha
Helix 39	AE3	B	357	359	Right-handed 310
Helix 40	AE4	B	360	370	Right-handed alpha
Helix 41	AE5	B	376	384	Right-handed 310
Helix 42	AE6	B	400	418	Right-handed alpha
Helix 43	AE7	B	445	466	Right-handed alpha
Helix 44	AE8	B	474	476	Right-handed 310
Helix 45	AE9	B	477	485	Right-handed alpha
Helix 46	AF1	B	486	504	Right-handed alpha
Helix 47	AF2	B	512	516	Right-handed 310
Helix 48	AF3	B	518	522	Right-handed 310

There are 10 sheets in PDB entry 8BAM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	31	first strand
Strand 2	A	56	58	anti-parallel
Strand 3	A	102	105	parallel
Strand 4	A	80	83	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	113	117	first strand
Strand 2	A	122	125	anti-parallel
Strand 3	A	226	233	anti-parallel
Strand 4	A	178	184	anti-parallel
Strand 5	A	190	192	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	146	first strand
Strand 2	A	235	236	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	351	first strand
Strand 2	A	241	248	anti-parallel
Strand 3	A	317	324	anti-parallel
Strand 4	A	276	279	anti-parallel
Strand 5	A	421	428	anti-parallel
Strand 6	A	433	442	anti-parallel
Strand 7	A	388	393	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	351	first strand
Strand 2	A	241	248	anti-parallel
Strand 3	A	317	324	anti-parallel
Strand 4	A	276	279	anti-parallel
Strand 5	A	421	428	anti-parallel
Strand 6	A	433	442	anti-parallel
Strand 7	A	396	397	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	31	first strand
Strand 2	B	56	58	anti-parallel
Strand 3	B	102	105	parallel
Strand 4	B	80	83	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	113	117	first strand
Strand 2	B	122	125	anti-parallel
Strand 3	B	226	233	anti-parallel
Strand 4	B	178	184	anti-parallel
Strand 5	B	190	192	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	145	146	first strand
Strand 2	B	235	236	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	348	351	first strand
Strand 2	B	241	248	anti-parallel
Strand 3	B	317	324	anti-parallel
Strand 4	B	276	279	anti-parallel
Strand 5	B	423	428	anti-parallel
Strand 6	B	433	442	anti-parallel
Strand 7	B	388	393	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	348	351	first strand
Strand 2	B	241	248	anti-parallel
Strand 3	B	317	324	anti-parallel
Strand 4	B	276	279	anti-parallel
Strand 5	B	423	428	anti-parallel
Strand 6	B	433	442	anti-parallel
Strand 7	B	396	397	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8BAM

Analysis of interatomic Contacts of Structural Units in PDB entry:
8BAM