Analysis of interatomic Contacts of Structural Units in PDB entry:
8BAO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8BAO entry

There are 3 chains in PDB entry 8BAO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0PRO 367
B
 MET 1PRO 367
C
 A 1 A 4
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 8BAO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 24Right-handed alpha
Helix 2
AA2
A
36 47Right-handed alpha
Helix 3
AA3
A
60 74Right-handed alpha
Helix 4
AA4
A
88 100Right-handed alpha
Helix 5
AA5
A
132 140Right-handed alpha
Helix 6
AA6
A
149 153Right-handed 310
Helix 7
AA7
A
154 160Right-handed alpha
Helix 8
AA8
A
160 171Right-handed alpha
Helix 9
AA9
A
171 185Right-handed alpha
Helix 10
AB1
A
228 233Right-handed alpha
Helix 11
AB2
A
236 249Right-handed alpha
Helix 12
AB3
A
296 309Right-handed alpha
Helix 13
AB4
A
324 334Right-handed alpha
Helix 14
AB5
A
342 345Right-handed 310
Helix 15
AB6
A
350 362Right-handed alpha
Helix 16
AB7
B
12 24Right-handed alpha
Helix 17
AB8
B
36 47Right-handed alpha
Helix 18
AB9
B
60 74Right-handed alpha
Helix 19
AC1
B
88 100Right-handed alpha
Helix 20
AC2
B
132 140Right-handed alpha
Helix 21
AC3
B
149 153Right-handed 310
Helix 22
AC4
B
154 160Right-handed alpha
Helix 23
AC5
B
160 171Right-handed alpha
Helix 24
AC6
B
171 185Right-handed alpha
Helix 25
AC7
B
228 233Right-handed alpha
Helix 26
AC8
B
236 249Right-handed alpha
Helix 27
AC9
B
296 309Right-handed alpha
Helix 28
AD1
B
324 334Right-handed alpha
Helix 29
AD2
B
342 345Right-handed 310
Helix 30
AD3
B
350 362Right-handed alpha
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There are 6 sheets in PDB entry 8BAO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 55first strand
Strand 2
A
27 32parallel
Strand 3
A
3 8parallel
Strand 4
A
79 83parallel
Strand 5
A
105 110parallel
Strand 6
A
115 118anti-parallel
Strand 7
A
123 126anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 148first strand
Strand 2
A
255 263anti-parallel
Strand 3
A
269 278anti-parallel
Strand 4
A
283 289anti-parallel
Strand 5
A
314 319parallel
Strand 6
A
337 340parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 192first strand
Strand 2
A
198 202anti-parallel
Strand 3
A
207 213anti-parallel
Strand 4
A
219 224anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 55first strand
Strand 2
B
27 32parallel
Strand 3
B
3 8parallel
Strand 4
B
79 83parallel
Strand 5
B
105 110parallel
Strand 6
B
115 118anti-parallel
Strand 7
B
123 126anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
146 148first strand
Strand 2
B
255 263anti-parallel
Strand 3
B
269 278anti-parallel
Strand 4
B
283 289anti-parallel
Strand 5
B
314 319parallel
Strand 6
B
337 340parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
190 192first strand
Strand 2
B
198 202anti-parallel
Strand 3
B
207 213anti-parallel
Strand 4
B
219 224anti-parallel
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