Analysis of interatomic Contacts of Structural Units in PDB entry:
8BAV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8BAV entry

There are 6 chains in PDB entry 8BAV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2LEU 64
A
 VAL 68GLU 247
B
 SER 2LEU 64
B
 VAL 68GLU 247
C
 GLY 10PRO 276
D
 LEU 12PRO 276
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 8BAV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 9Right-handed 310
Helix 2
AA2
A
37 39Right-handed 310
Helix 3
AA3
A
56 61Right-handed 310
Helix 4
AA4
A
68 72Right-handed 310
Helix 5
AA5
A
75 81Right-handed 310
Helix 6
AA6
A
82 87Right-handed alpha
Helix 7
AA7
A
232 245Right-handed alpha
Helix 8
AA8
B
3 9Right-handed 310
Helix 9
AA9
B
56 61Right-handed 310
Helix 10
AB1
B
68 72Right-handed 310
Helix 11
AB2
B
75 81Right-handed 310
Helix 12
AB3
B
82 87Right-handed alpha
Helix 13
AB4
B
232 245Right-handed alpha
Helix 14
AB5
C
13 25Right-handed alpha
Helix 15
AB6
C
36 48Right-handed alpha
Helix 16
AB7
C
51 53Right-handed 310
Helix 17
AB8
C
54 69Right-handed alpha
Helix 18
AB9
C
80 88Right-handed alpha
Helix 19
AC1
C
89 98Right-handed alpha
Helix 20
AC2
C
106 118Right-handed alpha
Helix 21
AC3
C
126 141Right-handed alpha
Helix 22
AC4
C
146 162Right-handed alpha
Helix 23
AC5
C
170 178Right-handed alpha
Helix 24
AC6
C
183 188Right-handed 310
Helix 25
AC7
C
194 210Right-handed alpha
Helix 26
AC8
C
219 232Right-handed alpha
Helix 27
AC9
C
238 254Right-handed alpha
Helix 28
AD1
C
263 270Right-handed alpha
Helix 29
AD2
D
13 25Right-handed alpha
Helix 30
AD3
D
36 48Right-handed alpha
Helix 31
AD4
D
54 68Right-handed alpha
Helix 32
AD5
D
79 88Right-handed alpha
Helix 33
AD6
D
89 98Right-handed alpha
Helix 34
AD7
D
106 118Right-handed alpha
Helix 35
AD8
D
127 141Right-handed alpha
Helix 36
AD9
D
146 162Right-handed alpha
Helix 37
AE1
D
170 178Right-handed alpha
Helix 38
AE2
D
183 188Right-handed 310
Helix 39
AE3
D
194 210Right-handed alpha
Helix 40
AE4
D
219 231Right-handed alpha
Helix 41
AE5
D
238 254Right-handed alpha
Helix 42
AE6
D
263 270Right-handed alpha
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There are 6 sheets in PDB entry 8BAV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 22first strand
Strand 2
A
25 36anti-parallel
Strand 3
A
41 48anti-parallel
Strand 4
A
217 227anti-parallel
Strand 5
A
199 208anti-parallel
Strand 6
A
149 155anti-parallel
Strand 7
A
160 170anti-parallel
Strand 8
A
176 187anti-parallel
Strand 9
A
92 100anti-parallel
Strand 10
A
105 115anti-parallel
Strand 11
A
118 128anti-parallel
Strand 12
A
12 22parallel
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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 22first strand
Strand 2
B
25 36anti-parallel
Strand 3
B
41 48anti-parallel
Strand 4
B
217 227anti-parallel
Strand 5
B
199 208anti-parallel
Strand 6
B
148 155anti-parallel
Strand 7
B
160 170anti-parallel
Strand 8
B
176 187anti-parallel
Strand 9
B
92 100anti-parallel
Strand 10
B
105 115anti-parallel
Strand 11
B
118 128anti-parallel
Strand 12
B
11 22parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
31 33first strand
Strand 2
C
77 79anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
216 217first strand
Strand 2
C
261 262anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
125 126first strand
Strand 2
D
168 169anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
216 217first strand
Strand 2
D
261 262anti-parallel
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