Analysis of interatomic Contacts of Structural Units in PDB entry:
8BAX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8BAX entry

There is 1 chain in PDB entry 8BAX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 20LYS 300
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 8BAX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
48 59Right-handed alpha
Helix 2
AA2
A
71 79Right-handed 310
Helix 3
AA3
A
92 100Right-handed alpha
Helix 4
AA4
A
107 112Right-handed 310
Helix 5
AA5
A
113 121Right-handed alpha
Helix 6
AA6
A
129 131Right-handed 310
Helix 7
AA7
A
132 149Right-handed alpha
Helix 8
AA8
A
150 170Right-handed alpha
Helix 9
AA9
A
197 202Right-handed alpha
Helix 10
AB1
A
223 231Right-handed alpha
Helix 11
AB2
A
240 245Right-handed alpha
Helix 12
AB3
A
249 255Right-handed alpha
Helix 13
AB4
A
256 261Right-handed alpha
Helix 14
AB5
A
262 267Right-handed alpha
Helix 15
AB6
A
274 279Right-handed alpha
Helix 16
AB7
A
284 300Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 8BAX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 30first strand
Strand 2
A
33 38anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 46first strand
Strand 2
A
103 106parallel
Strand 3
A
123 125parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 65first strand
Strand 2
A
83 84parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
220 222first strand
Strand 2
A
186 190anti-parallel
Strand 3
A
177 183anti-parallel
Strand 4
A
234 239parallel
Strand 5
A
270 273parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il