Analysis of interatomic Contacts of Structural Units in PDB entry:
8BB1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8BB1 entry

There are 8 chains in PDB entry 8BB1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 1	LYS 383
B	ALA 1	LYS 383
C	ALA 1	LYS 383
D	ALA 1	LYS 383
E	MET 1	HIS 153
F	MET 1	HIS 153
G	MET 1	HIS 153
H	MET 1	HIS 153

There are 76 helices in PDB entry 8BB1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	34	Right-handed alpha
Helix 2	AA2	A	63	76	Right-handed alpha
Helix 3	AA3	A	79	83	Right-handed 310
Helix 4	AA4	A	110	114	Right-handed 310
Helix 5	AA5	A	135	154	Right-handed alpha
Helix 6	AA6	A	194	206	Right-handed alpha
Helix 7	AA7	A	206	211	Right-handed alpha
Helix 8	AA8	A	233	237	Right-handed 310
Helix 9	AA9	A	245	251	Right-handed alpha
Helix 10	AB1	A	252	255	Right-handed 310
Helix 11	AB2	A	269	288	Right-handed alpha
Helix 12	AB3	A	321	333	Right-handed alpha
Helix 13	AB4	A	336	345	Right-handed alpha
Helix 14	AB5	A	352	356	Right-handed 310
Helix 15	AB6	A	365	369	Right-handed 310
Helix 16	AB7	A	372	380	Right-handed alpha
Helix 17	AB8	B	14	34	Right-handed alpha
Helix 18	AB9	B	63	76	Right-handed alpha
Helix 19	AC1	B	79	83	Right-handed 310
Helix 20	AC2	B	110	114	Right-handed 310
Helix 21	AC3	B	135	154	Right-handed alpha
Helix 22	AC4	B	194	206	Right-handed alpha
Helix 23	AC5	B	206	211	Right-handed alpha
Helix 24	AC6	B	233	237	Right-handed 310
Helix 25	AC7	B	245	251	Right-handed alpha
Helix 26	AC8	B	252	255	Right-handed 310
Helix 27	AC9	B	269	288	Right-handed alpha
Helix 28	AD1	B	321	333	Right-handed alpha
Helix 29	AD2	B	336	345	Right-handed alpha
Helix 30	AD3	B	352	356	Right-handed 310
Helix 31	AD4	B	365	369	Right-handed 310
Helix 32	AD5	B	372	380	Right-handed alpha
Helix 33	AD6	C	14	34	Right-handed alpha
Helix 34	AD7	C	63	76	Right-handed alpha
Helix 35	AD8	C	79	83	Right-handed 310
Helix 36	AD9	C	110	114	Right-handed 310
Helix 37	AE1	C	135	154	Right-handed alpha
Helix 38	AE2	C	194	206	Right-handed alpha
Helix 39	AE3	C	206	211	Right-handed alpha
Helix 40	AE4	C	233	237	Right-handed 310
Helix 41	AE5	C	245	251	Right-handed alpha
Helix 42	AE6	C	252	255	Right-handed 310
Helix 43	AE7	C	269	288	Right-handed alpha
Helix 44	AE8	C	321	333	Right-handed alpha
Helix 45	AE9	C	336	345	Right-handed alpha
Helix 46	AF1	C	352	356	Right-handed 310
Helix 47	AF2	C	365	369	Right-handed 310
Helix 48	AF3	C	372	380	Right-handed alpha
Helix 49	AF4	D	14	34	Right-handed alpha
Helix 50	AF5	D	63	76	Right-handed alpha
Helix 51	AF6	D	79	83	Right-handed 310
Helix 52	AF7	D	110	114	Right-handed 310
Helix 53	AF8	D	135	154	Right-handed alpha
Helix 54	AF9	D	194	206	Right-handed alpha
Helix 55	AG1	D	206	211	Right-handed alpha
Helix 56	AG2	D	233	237	Right-handed 310
Helix 57	AG3	D	245	251	Right-handed alpha
Helix 58	AG4	D	252	255	Right-handed 310
Helix 59	AG5	D	269	288	Right-handed alpha
Helix 60	AG6	D	321	333	Right-handed alpha
Helix 61	AG7	D	336	345	Right-handed alpha
Helix 62	AG8	D	352	356	Right-handed 310
Helix 63	AG9	D	365	369	Right-handed 310
Helix 64	AH1	D	372	380	Right-handed alpha
Helix 65	AH2	E	23	41	Right-handed alpha
Helix 66	AH3	E	41	46	Right-handed alpha
Helix 67	AH4	E	77	92	Right-handed alpha
Helix 68	AH5	F	23	41	Right-handed alpha
Helix 69	AH6	F	41	46	Right-handed alpha
Helix 70	AH7	F	77	92	Right-handed alpha
Helix 71	AH8	G	23	41	Right-handed alpha
Helix 72	AH9	G	41	46	Right-handed alpha
Helix 73	AI1	G	77	92	Right-handed alpha
Helix 74	AI2	H	23	41	Right-handed alpha
Helix 75	AI3	H	41	46	Right-handed alpha
Helix 76	AI4	H	77	92	Right-handed alpha

There are 20 sheets in PDB entry 8BB1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	10	first strand
Strand 2	A	160	173	anti-parallel
Strand 3	A	176	189	anti-parallel
Strand 4	A	221	224	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	98	first strand
Strand 2	A	49	57	parallel
Strand 3	A	38	45	anti-parallel
Strand 4	A	240	241	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	120	127	first strand
Strand 2	A	293	300	anti-parallel
Strand 3	A	309	313	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	10	first strand
Strand 2	B	160	173	anti-parallel
Strand 3	B	176	189	anti-parallel
Strand 4	B	221	224	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	98	first strand
Strand 2	B	49	57	parallel
Strand 3	B	38	45	anti-parallel
Strand 4	B	240	241	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	120	127	first strand
Strand 2	B	293	300	anti-parallel
Strand 3	B	309	313	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	10	first strand
Strand 2	C	160	173	anti-parallel
Strand 3	C	176	189	anti-parallel
Strand 4	C	221	224	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	98	first strand
Strand 2	C	49	57	parallel
Strand 3	C	38	45	anti-parallel
Strand 4	C	240	241	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	120	127	first strand
Strand 2	C	293	300	anti-parallel
Strand 3	C	309	313	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	10	first strand
Strand 2	D	160	173	anti-parallel
Strand 3	D	176	189	anti-parallel
Strand 4	D	221	224	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	90	98	first strand
Strand 2	D	49	57	parallel
Strand 3	D	38	45	anti-parallel
Strand 4	D	240	241	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	120	127	first strand
Strand 2	D	293	300	anti-parallel
Strand 3	D	309	313	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	47	54	first strand
Strand 2	E	69	75	anti-parallel
Strand 3	E	11	15	anti-parallel
Strand 4	E	97	100	anti-parallel
Strand 5	E	107	111	anti-parallel
Strand 6	E	119	122	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	126	129	first strand
Strand 2	E	148	152	anti-parallel
Strand 3	E	141	142	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	47	54	first strand
Strand 2	F	69	75	anti-parallel
Strand 3	F	11	15	anti-parallel
Strand 4	F	97	100	anti-parallel
Strand 5	F	107	111	anti-parallel
Strand 6	F	119	122	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	126	129	first strand
Strand 2	F	148	152	anti-parallel
Strand 3	F	141	142	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	47	54	first strand
Strand 2	G	69	75	anti-parallel
Strand 3	G	11	15	anti-parallel
Strand 4	G	97	100	anti-parallel
Strand 5	G	107	111	anti-parallel
Strand 6	G	119	122	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	126	129	first strand
Strand 2	G	148	152	anti-parallel
Strand 3	G	141	142	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	47	54	first strand
Strand 2	H	69	75	anti-parallel
Strand 3	H	11	15	anti-parallel
Strand 4	H	97	100	anti-parallel
Strand 5	H	107	111	anti-parallel
Strand 6	H	119	122	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	126	129	first strand
Strand 2	H	148	152	anti-parallel
Strand 3	H	141	142	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8BB1

Analysis of interatomic Contacts of Structural Units in PDB entry:
8BB1