Analysis of interatomic Contacts of Structural Units in PDB entry:
8BBE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8BBE entry

There are 4 chains in PDB entry 8BBE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	MET 1	GLY 740
D	ASP 669	PRO 1316
E	PHE -2	GLY 1181
F	MET 130	GLU 186

There are 93 helices in PDB entry 8BBE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	173	177	Right-handed 310
Helix 2	AA2	C	188	193	Right-handed 310
Helix 3	AA3	C	246	250	Right-handed 310
Helix 4	AA4	C	617	627	Right-handed alpha
Helix 5	AA5	C	629	638	Right-handed alpha
Helix 6	AA6	C	642	656	Right-handed alpha
Helix 7	AA7	C	658	670	Right-handed alpha
Helix 8	AA8	C	671	686	Right-handed alpha
Helix 9	AA9	C	691	703	Right-handed alpha
Helix 10	AB1	C	705	716	Right-handed alpha
Helix 11	AB2	C	718	729	Right-handed alpha
Helix 12	AB3	C	731	736	Right-handed alpha
Helix 13	AB4	C	737	739	Right-handed 310
Helix 14	AB5	D	670	679	Right-handed alpha
Helix 15	AB6	D	686	701	Right-handed alpha
Helix 16	AB7	D	704	719	Right-handed alpha
Helix 17	AB8	D	721	735	Right-handed alpha
Helix 18	AB9	D	737	750	Right-handed alpha
Helix 19	AC1	D	755	769	Right-handed alpha
Helix 20	AC2	D	771	785	Right-handed alpha
Helix 21	AC3	D	790	802	Right-handed alpha
Helix 22	AC4	D	804	815	Right-handed alpha
Helix 23	AC5	D	823	844	Right-handed alpha
Helix 24	AC6	D	846	872	Right-handed alpha
Helix 25	AC7	D	875	897	Right-handed alpha
Helix 26	AC8	D	899	914	Right-handed alpha
Helix 27	AC9	D	917	931	Right-handed alpha
Helix 28	AD1	D	933	948	Right-handed alpha
Helix 29	AD2	D	951	965	Right-handed alpha
Helix 30	AD3	D	967	982	Right-handed alpha
Helix 31	AD4	D	985	1000	Right-handed alpha
Helix 32	AD5	D	1001	1004	Right-handed 310
Helix 33	AD6	D	1005	1016	Right-handed alpha
Helix 34	AD7	D	1018	1021	Right-handed 310
Helix 35	AD8	D	1022	1037	Right-handed alpha
Helix 36	AD9	D	1038	1050	Right-handed alpha
Helix 37	AE1	D	1054	1069	Right-handed alpha
Helix 38	AE2	D	1077	1082	Right-handed alpha
Helix 39	AE3	D	1084	1089	Right-handed alpha
Helix 40	AE4	D	1090	1111	Right-handed alpha
Helix 41	AE5	D	1115	1133	Right-handed alpha
Helix 42	AE6	D	1135	1153	Right-handed alpha
Helix 43	AE7	D	1156	1170	Right-handed alpha
Helix 44	AE8	D	1172	1185	Right-handed alpha
Helix 45	AE9	D	1192	1210	Right-handed alpha
Helix 46	AF1	D	1212	1227	Right-handed alpha
Helix 47	AF2	D	1230	1244	Right-handed alpha
Helix 48	AF3	D	1246	1261	Right-handed alpha
Helix 49	AF4	D	1265	1279	Right-handed alpha
Helix 50	AF5	D	1281	1296	Right-handed alpha
Helix 51	AF6	D	1301	1315	Right-handed alpha
Helix 52	AF7	E	12	15	Right-handed 310
Helix 53	AF8	E	195	199	Right-handed 310
Helix 54	AF9	E	473	475	Right-handed 310
Helix 55	AG1	E	495	501	Right-handed 310
Helix 56	AG2	E	647	652	Right-handed alpha
Helix 57	AG3	E	659	661	Right-handed 310
Helix 58	AG4	E	668	681	Right-handed alpha
Helix 59	AG5	E	682	693	Right-handed alpha
Helix 60	AG6	E	695	709	Right-handed alpha
Helix 61	AG7	E	711	722	Right-handed alpha
Helix 62	AG8	E	724	735	Right-handed alpha
Helix 63	AG9	E	739	751	Right-handed alpha
Helix 64	AH1	E	753	764	Right-handed alpha
Helix 65	AH2	E	766	778	Right-handed alpha
Helix 66	AH3	E	779	790	Right-handed alpha
Helix 67	AH4	E	795	813	Right-handed alpha
Helix 68	AH5	E	815	824	Right-handed alpha
Helix 69	AH6	E	828	839	Right-handed alpha
Helix 70	AH7	E	841	852	Right-handed alpha
Helix 71	AH8	E	858	870	Right-handed alpha
Helix 72	AH9	E	871	882	Right-handed alpha
Helix 73	AI1	E	884	895	Right-handed alpha
Helix 74	AI2	E	897	904	Right-handed alpha
Helix 75	AI3	E	908	927	Right-handed alpha
Helix 76	AI4	E	929	940	Right-handed alpha
Helix 77	AI5	E	942	960	Right-handed alpha
Helix 78	AI6	E	963	985	Right-handed alpha
Helix 79	AI7	E	986	986	Right-handed 310
Helix 80	AI8	E	1018	1022	Right-handed 310
Helix 81	AI9	E	1024	1042	Right-handed alpha
Helix 82	AJ1	E	1044	1055	Right-handed alpha
Helix 83	AJ2	E	1056	1059	Right-handed 310
Helix 84	AJ3	E	1063	1079	Right-handed alpha
Helix 85	AJ4	E	1080	1093	Right-handed alpha
Helix 86	AJ5	E	1098	1116	Right-handed alpha
Helix 87	AJ6	E	1126	1131	Right-handed alpha
Helix 88	AJ7	E	1165	1170	Right-handed 310
Helix 89	AJ8	F	131	141	Right-handed alpha
Helix 90	AJ9	F	142	146	Right-handed alpha
Helix 91	AK1	F	154	159	Right-handed alpha
Helix 92	AK2	F	163	168	Right-handed alpha
Helix 93	AK3	F	175	186	Right-handed alpha

There are 32 sheets in PDB entry 8BBE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	10	first strand
Strand 2	C	344	350	anti-parallel
Strand 3	C	335	340	anti-parallel
Strand 4	C	324	329	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	15	20	first strand
Strand 2	C	26	31	anti-parallel
Strand 3	C	34	39	anti-parallel
Strand 4	C	45	49	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	56	61	first strand
Strand 2	C	67	72	anti-parallel
Strand 3	C	76	81	anti-parallel
Strand 4	C	88	91	anti-parallel
Strand 5	C	209	210	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	101	first strand
Strand 2	C	108	112	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	135	140	first strand
Strand 2	C	146	151	anti-parallel
Strand 3	C	155	160	anti-parallel
Strand 4	C	165	170	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	179	184	first strand
Strand 2	C	253	258	anti-parallel
Strand 3	C	262	267	anti-parallel
Strand 4	C	272	278	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	283	288	first strand
Strand 2	C	294	299	anti-parallel
Strand 3	C	304	308	anti-parallel
Strand 4	C	313	317	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	356	357	first strand
Strand 2	C	362	367	anti-parallel
Strand 3	C	371	376	anti-parallel
Strand 4	C	382	386	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	393	397	first strand
Strand 2	C	400	404	anti-parallel
Strand 3	C	409	414	anti-parallel
Strand 4	C	424	430	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	438	441	first strand
Strand 2	C	445	450	anti-parallel
Strand 3	C	453	458	anti-parallel
Strand 4	C	463	468	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	473	478	first strand
Strand 2	C	487	492	anti-parallel
Strand 3	C	496	501	anti-parallel
Strand 4	C	507	512	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	519	522	first strand
Strand 2	C	528	532	anti-parallel
Strand 3	C	538	542	anti-parallel
Strand 4	C	547	552	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	557	560	first strand
Strand 2	C	567	572	anti-parallel
Strand 3	C	575	580	anti-parallel
Strand 4	C	585	589	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	593	598	first strand
Strand 2	C	601	605	anti-parallel
Strand 3	C	613	614	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	2	10	first strand
Strand 2	E	325	332	anti-parallel
Strand 3	E	317	322	anti-parallel
Strand 4	E	306	311	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	17	22	first strand
Strand 2	E	29	33	anti-parallel
Strand 3	E	38	42	anti-parallel
Strand 4	E	63	67	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	76	80	first strand
Strand 2	E	85	89	anti-parallel
Strand 3	E	94	101	anti-parallel
Strand 4	E	104	112	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	118	123	first strand
Strand 2	E	129	134	anti-parallel
Strand 3	E	139	143	anti-parallel
Strand 4	E	148	150	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	162	164	first strand
Strand 2	E	170	175	anti-parallel
Strand 3	E	179	184	anti-parallel
Strand 4	E	189	192	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	207	212	first strand
Strand 2	E	227	231	anti-parallel
Strand 3	E	235	239	anti-parallel
Strand 4	E	248	251	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	255	261	first strand
Strand 2	E	268	275	anti-parallel
Strand 3	E	282	289	anti-parallel
Strand 4	E	295	301	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	337	340	first strand
Strand 2	E	343	350	anti-parallel
Strand 3	E	353	362	anti-parallel
Strand 4	E	367	373	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	376	382	first strand
Strand 2	E	385	391	anti-parallel
Strand 3	E	410	416	anti-parallel
Strand 4	E	421	427	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	433	436	first strand
Strand 2	E	440	444	anti-parallel
Strand 3	E	448	453	anti-parallel
Strand 4	E	477	481	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	507	512	first strand
Strand 2	E	516	521	anti-parallel
Strand 3	E	525	530	anti-parallel
Strand 4	E	536	541	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	546	551	first strand
Strand 2	E	557	562	anti-parallel
Strand 3	E	566	577	anti-parallel
Strand 4	E	583	588	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	546	551	first strand
Strand 2	E	557	562	anti-parallel
Strand 3	E	566	577	anti-parallel
Strand 4	E	593	594	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	599	601	first strand
Strand 2	E	608	611	anti-parallel
Strand 3	E	620	621	anti-parallel
Strand 4	E	624	625	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	616	617	first strand
Strand 2	E	629	630	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	634	639	first strand
Strand 2	E	642	646	anti-parallel
Strand 3	E	663	667	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1153	1154	first strand
Strand 2	E	1161	1162	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	147	148	first strand
Strand 2	F	152	153	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8BBE

Analysis of interatomic Contacts of Structural Units in PDB entry:
8BBE