Analysis of interatomic Contacts of Structural Units in PDB entry:
8BBF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8BBF entry

There are 3 chains in PDB entry 8BBF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLY 789
B	MET 1	ALA 1148
C	LYS 802	PRO 1241

There are 66 helices in PDB entry 8BBF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	228	232	Right-handed 310
Helix 2	AA2	A	316	320	Right-handed 310
Helix 3	AA3	A	461	465	Right-handed alpha
Helix 4	AA4	A	633	636	Right-handed 310
Helix 5	AA5	A	645	659	Right-handed alpha
Helix 6	AA6	A	661	673	Right-handed alpha
Helix 7	AA7	A	674	688	Right-handed alpha
Helix 8	AA8	A	690	702	Right-handed alpha
Helix 9	AA9	A	703	714	Right-handed alpha
Helix 10	AB1	A	718	730	Right-handed alpha
Helix 11	AB2	A	732	743	Right-handed alpha
Helix 12	AB3	A	746	756	Right-handed alpha
Helix 13	AB4	A	758	770	Right-handed alpha
Helix 14	AB5	A	773	789	Right-handed alpha
Helix 15	AB6	B	240	242	Right-handed 310
Helix 16	AB7	B	316	320	Right-handed 310
Helix 17	AB8	B	364	367	Right-handed 310
Helix 18	AB9	B	562	566	Right-handed alpha
Helix 19	AC1	B	640	644	Right-handed 310
Helix 20	AC2	B	760	763	Right-handed 310
Helix 21	AC3	B	769	786	Right-handed alpha
Helix 22	AC4	B	787	796	Right-handed alpha
Helix 23	AC5	B	800	815	Right-handed alpha
Helix 24	AC6	B	816	827	Right-handed alpha
Helix 25	AC7	B	829	840	Right-handed alpha
Helix 26	AC8	B	844	857	Right-handed alpha
Helix 27	AC9	B	858	870	Right-handed alpha
Helix 28	AD1	B	871	882	Right-handed alpha
Helix 29	AD2	B	884	895	Right-handed alpha
Helix 30	AD3	B	896	898	Right-handed 310
Helix 31	AD4	B	899	914	Right-handed alpha
Helix 32	AD5	B	916	927	Right-handed alpha
Helix 33	AD6	B	929	938	Right-handed alpha
Helix 34	AD7	B	941	953	Right-handed alpha
Helix 35	AD8	B	954	968	Right-handed alpha
Helix 36	AD9	B	970	981	Right-handed alpha
Helix 37	AE1	B	983	995	Right-handed alpha
Helix 38	AE2	B	996	1008	Right-handed alpha
Helix 39	AE3	B	1009	1023	Right-handed alpha
Helix 40	AE4	B	1025	1036	Right-handed alpha
Helix 41	AE5	B	1038	1050	Right-handed alpha
Helix 42	AE6	B	1051	1062	Right-handed alpha
Helix 43	AE7	B	1063	1078	Right-handed alpha
Helix 44	AE8	B	1080	1091	Right-handed alpha
Helix 45	AE9	B	1093	1104	Right-handed alpha
Helix 46	AF1	B	1106	1116	Right-handed alpha
Helix 47	AF2	B	1122	1136	Right-handed alpha
Helix 48	AF3	B	1138	1148	Right-handed alpha
Helix 49	AF4	C	804	818	Right-handed alpha
Helix 50	AF5	C	820	832	Right-handed alpha
Helix 51	AF6	C	833	844	Right-handed alpha
Helix 52	AF7	C	846	857	Right-handed alpha
Helix 53	AF8	C	860	875	Right-handed alpha
Helix 54	AF9	C	879	888	Right-handed alpha
Helix 55	AG1	C	890	908	Right-handed alpha
Helix 56	AG2	C	910	929	Right-handed alpha
Helix 57	AG3	C	930	933	Right-handed 310
Helix 58	AG4	C	934	964	Right-handed alpha
Helix 59	AG5	C	970	985	Right-handed alpha
Helix 60	AG6	C	994	1010	Right-handed alpha
Helix 61	AG7	C	1011	1023	Right-handed alpha
Helix 62	AG8	C	1028	1043	Right-handed alpha
Helix 63	AG9	C	1050	1054	Right-handed 310
Helix 64	AH1	C	1103	1113	Right-handed alpha
Helix 65	AH2	C	1169	1176	Right-handed alpha
Helix 66	AH3	C	1216	1227	Right-handed alpha

There are 33 sheets in PDB entry 8BBF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	7	first strand
Strand 2	A	343	347	anti-parallel
Strand 3	A	333	338	anti-parallel
Strand 4	A	322	327	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	20	first strand
Strand 2	A	29	32	anti-parallel
Strand 3	A	37	41	anti-parallel
Strand 4	A	49	52	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	62	first strand
Strand 2	A	68	73	anti-parallel
Strand 3	A	78	83	anti-parallel
Strand 4	A	89	93	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	105	first strand
Strand 2	A	111	116	anti-parallel
Strand 3	A	121	125	anti-parallel
Strand 4	A	131	134	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	142	147	first strand
Strand 2	A	153	157	anti-parallel
Strand 3	A	161	165	anti-parallel
Strand 4	A	171	176	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	181	187	first strand
Strand 2	A	201	206	anti-parallel
Strand 3	A	210	215	anti-parallel
Strand 4	A	223	226	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	234	240	first strand
Strand 2	A	244	249	anti-parallel
Strand 3	A	253	258	anti-parallel
Strand 4	A	267	272	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	278	284	first strand
Strand 2	A	289	294	anti-parallel
Strand 3	A	297	302	anti-parallel
Strand 4	A	305	314	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	357	first strand
Strand 2	A	360	366	anti-parallel
Strand 3	A	369	374	anti-parallel
Strand 4	A	379	385	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	392	395	first strand
Strand 2	A	399	404	anti-parallel
Strand 3	A	407	413	anti-parallel
Strand 4	A	418	425	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	430	436	first strand
Strand 2	A	439	444	anti-parallel
Strand 3	A	447	452	anti-parallel
Strand 4	A	466	469	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	478	483	first strand
Strand 2	A	487	492	anti-parallel
Strand 3	A	496	501	anti-parallel
Strand 4	A	506	512	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	517	522	first strand
Strand 2	A	529	533	anti-parallel
Strand 3	A	538	541	anti-parallel
Strand 4	A	548	550	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	560	563	first strand
Strand 2	A	572	576	anti-parallel
Strand 3	A	580	587	anti-parallel
Strand 4	A	595	603	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	609	614	first strand
Strand 2	A	617	621	anti-parallel
Strand 3	A	627	631	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	8	first strand
Strand 2	B	401	408	anti-parallel
Strand 3	B	393	397	anti-parallel
Strand 4	B	381	385	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	23	first strand
Strand 2	B	30	35	anti-parallel
Strand 3	B	41	46	anti-parallel
Strand 4	B	58	60	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	69	first strand
Strand 2	B	75	80	anti-parallel
Strand 3	B	85	89	anti-parallel
Strand 4	B	94	97	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	108	111	first strand
Strand 2	B	117	121	anti-parallel
Strand 3	B	126	131	anti-parallel
Strand 4	B	144	147	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	152	157	first strand
Strand 2	B	205	209	anti-parallel
Strand 3	B	213	217	anti-parallel
Strand 4	B	223	228	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	233	239	first strand
Strand 2	B	244	249	anti-parallel
Strand 3	B	253	258	anti-parallel
Strand 4	B	266	272	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	282	286	first strand
Strand 2	B	290	294	anti-parallel
Strand 3	B	300	304	anti-parallel
Strand 4	B	309	313	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	327	333	first strand
Strand 2	B	338	343	anti-parallel
Strand 3	B	347	353	anti-parallel
Strand 4	B	369	371	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	327	333	first strand
Strand 2	B	338	343	anti-parallel
Strand 3	B	347	353	anti-parallel
Strand 4	B	375	376	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	411	414	first strand
Strand 2	B	417	423	anti-parallel
Strand 3	B	426	431	anti-parallel
Strand 4	B	437	441	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	448	451	first strand
Strand 2	B	455	459	anti-parallel
Strand 3	B	463	470	anti-parallel
Strand 4	B	473	481	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	487	490	first strand
Strand 2	B	493	498	anti-parallel
Strand 3	B	501	505	anti-parallel
Strand 4	B	511	516	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	524	530	first strand
Strand 2	B	533	538	anti-parallel
Strand 3	B	542	547	anti-parallel
Strand 4	B	554	561	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	571	577	first strand
Strand 2	B	583	589	anti-parallel
Strand 3	B	598	603	anti-parallel
Strand 4	B	608	613	anti-parallel
Strand 5	B	619	623	anti-parallel
Strand 6	B	632	635	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	646	653	first strand
Strand 2	B	660	667	anti-parallel
Strand 3	B	692	700	anti-parallel
Strand 4	B	704	712	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	717	724	first strand
Strand 2	B	727	732	anti-parallel
Strand 3	B	754	758	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1166	1168	first strand
Strand 2	C	1093	1098	parallel
Strand 3	C	1193	1197	anti-parallel
Strand 4	C	1181	1184	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1204	1206	first strand
Strand 2	C	1213	1215	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8BBF

Analysis of interatomic Contacts of Structural Units in PDB entry:
8BBF