Analysis of interatomic Contacts of Structural Units in PDB entry:
8BBL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8BBL entry

There are 8 chains in PDB entry 8BBL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 129	PRO 676
B	ALA 129	GLY 677
C	ALA 129	PRO 676
D	ALA 129	PRO 676
E	ALA 129	PRO 676
F	ALA 129	PRO 676
H	ALA 129	GLY 677
G	ALA 129	PRO 676

There are134 helices in PDB entry 8BBL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	165	171	Right-handed alpha
Helix 2	AA2	A	238	253	Right-handed alpha
Helix 3	AA3	A	286	300	Right-handed alpha
Helix 4	AA4	A	323	327	Right-handed 310
Helix 5	AA5	A	368	373	Right-handed alpha
Helix 6	AA6	A	374	379	Right-handed alpha
Helix 7	AA7	A	380	383	Right-handed 310
Helix 8	AA8	A	433	440	Right-handed alpha
Helix 9	AA9	A	443	449	Right-handed alpha
Helix 10	AB1	A	463	468	Right-handed alpha
Helix 11	AB2	A	474	479	Right-handed alpha
Helix 12	AB3	A	486	491	Right-handed alpha
Helix 13	AB4	A	492	499	Right-handed alpha
Helix 14	AB5	A	510	514	Right-handed 310
Helix 15	AB6	A	559	564	Right-handed alpha
Helix 16	AB7	A	621	630	Right-handed alpha
Helix 17	AB8	A	632	642	Right-handed alpha
Helix 18	AB9	A	648	650	Right-handed 310
Helix 19	AC1	A	651	656	Right-handed alpha
Helix 20	AC2	A	659	666	Right-handed alpha
Helix 21	AC3	B	168	173	Right-handed 310
Helix 22	AC4	B	238	253	Right-handed alpha
Helix 23	AC5	B	286	291	Right-handed alpha
Helix 24	AC6	B	294	300	Right-handed alpha
Helix 25	AC7	B	368	382	Right-handed alpha
Helix 26	AC8	B	403	407	Right-handed 310
Helix 27	AC9	B	433	449	Right-handed alpha
Helix 28	AD1	B	475	480	Right-handed alpha
Helix 29	AD2	B	483	485	Right-handed 310
Helix 30	AD3	B	486	499	Right-handed alpha
Helix 31	AD4	B	536	541	Right-handed alpha
Helix 32	AD5	B	624	629	Right-handed alpha
Helix 33	AD6	B	631	642	Right-handed alpha
Helix 34	AD7	B	643	647	Right-handed 310
Helix 35	AD8	B	649	657	Right-handed alpha
Helix 36	AD9	B	660	665	Right-handed alpha
Helix 37	AE1	C	168	173	Right-handed 310
Helix 38	AE2	C	238	253	Right-handed alpha
Helix 39	AE3	C	285	299	Right-handed alpha
Helix 40	AE4	C	368	382	Right-handed alpha
Helix 41	AE5	C	403	407	Right-handed 310
Helix 42	AE6	C	432	449	Right-handed alpha
Helix 43	AE7	C	471	479	Right-handed alpha
Helix 44	AE8	C	485	499	Right-handed alpha
Helix 45	AE9	C	516	520	Right-handed 310
Helix 46	AF1	C	536	541	Right-handed alpha
Helix 47	AF2	C	624	629	Right-handed alpha
Helix 48	AF3	C	631	642	Right-handed alpha
Helix 49	AF4	C	643	647	Right-handed 310
Helix 50	AF5	C	649	657	Right-handed alpha
Helix 51	AF6	C	660	665	Right-handed alpha
Helix 52	AF7	D	168	173	Right-handed 310
Helix 53	AF8	D	238	253	Right-handed alpha
Helix 54	AF9	D	290	299	Right-handed alpha
Helix 55	AG1	D	370	375	Right-handed alpha
Helix 56	AG2	D	376	382	Right-handed 310
Helix 57	AG3	D	433	449	Right-handed alpha
Helix 58	AG4	D	471	479	Right-handed alpha
Helix 59	AG5	D	485	499	Right-handed alpha
Helix 60	AG6	D	516	520	Right-handed 310
Helix 61	AG7	D	536	541	Right-handed alpha
Helix 62	AG8	D	621	629	Right-handed alpha
Helix 63	AG9	D	631	642	Right-handed alpha
Helix 64	AH1	D	651	657	Right-handed alpha
Helix 65	AH2	D	660	665	Right-handed alpha
Helix 66	AH3	E	168	173	Right-handed 310
Helix 67	AH4	E	238	253	Right-handed alpha
Helix 68	AH5	E	286	300	Right-handed alpha
Helix 69	AH6	E	322	326	Right-handed 310
Helix 70	AH7	E	368	380	Right-handed alpha
Helix 71	AH8	E	403	407	Right-handed 310
Helix 72	AH9	E	432	449	Right-handed alpha
Helix 73	AI1	E	471	479	Right-handed alpha
Helix 74	AI2	E	486	499	Right-handed alpha
Helix 75	AI3	E	509	514	Right-handed 310
Helix 76	AI4	E	516	520	Right-handed 310
Helix 77	AI5	E	535	543	Right-handed alpha
Helix 78	AI6	E	602	605	Right-handed 310
Helix 79	AI7	E	621	627	Right-handed alpha
Helix 80	AI8	E	631	642	Right-handed alpha
Helix 81	AI9	E	643	647	Right-handed 310
Helix 82	AJ1	E	651	660	Right-handed alpha
Helix 83	AJ2	E	660	665	Right-handed alpha
Helix 84	AJ3	F	168	173	Right-handed 310
Helix 85	AJ4	F	238	253	Right-handed alpha
Helix 86	AJ5	F	285	300	Right-handed alpha
Helix 87	AJ6	F	368	380	Right-handed alpha
Helix 88	AJ7	F	403	407	Right-handed 310
Helix 89	AJ8	F	433	449	Right-handed alpha
Helix 90	AJ9	F	471	479	Right-handed alpha
Helix 91	AK1	F	485	499	Right-handed alpha
Helix 92	AK2	F	516	520	Right-handed 310
Helix 93	AK3	F	536	543	Right-handed alpha
Helix 94	AK4	F	586	590	Right-handed 310
Helix 95	AK5	F	622	629	Right-handed alpha
Helix 96	AK6	F	631	642	Right-handed alpha
Helix 97	AK7	F	643	647	Right-handed 310
Helix 98	AK8	F	651	657	Right-handed alpha
Helix 99	AK9	F	660	665	Right-handed alpha
Helix 100	AL1	H	168	173	Right-handed 310
Helix 101	AL2	H	238	253	Right-handed alpha
Helix 102	AL3	H	286	300	Right-handed alpha
Helix 103	AL4	H	368	380	Right-handed alpha
Helix 104	AL5	H	403	407	Right-handed 310
Helix 105	AL6	H	433	449	Right-handed alpha
Helix 106	AL7	H	469	479	Right-handed alpha
Helix 107	AL8	H	484	497	Right-handed alpha
Helix 108	AL9	H	516	520	Right-handed 310
Helix 109	AM1	H	535	543	Right-handed alpha
Helix 110	AM2	H	586	590	Right-handed 310
Helix 111	AM3	H	621	629	Right-handed alpha
Helix 112	AM4	H	631	642	Right-handed alpha
Helix 113	AM5	H	643	647	Right-handed 310
Helix 114	AM6	H	649	656	Right-handed alpha
Helix 115	AM7	H	657	659	Right-handed 310
Helix 116	AM8	H	660	665	Right-handed alpha
Helix 117	AM9	G	168	173	Right-handed 310
Helix 118	AN1	G	238	253	Right-handed alpha
Helix 119	AN2	G	285	300	Right-handed alpha
Helix 120	AN3	G	322	326	Right-handed 310
Helix 121	AN4	G	368	379	Right-handed alpha
Helix 122	AN5	G	380	382	Right-handed 310
Helix 123	AN6	G	403	407	Right-handed 310
Helix 124	AN7	G	433	449	Right-handed alpha
Helix 125	AN8	G	471	479	Right-handed alpha
Helix 126	AN9	G	484	498	Right-handed alpha
Helix 127	AO1	G	516	520	Right-handed 310
Helix 128	AO2	G	536	541	Right-handed alpha
Helix 129	AO3	G	586	590	Right-handed 310
Helix 130	AO4	G	621	629	Right-handed alpha
Helix 131	AO5	G	631	642	Right-handed alpha
Helix 132	AO6	G	643	647	Right-handed 310
Helix 133	AO7	G	649	660	Right-handed alpha
Helix 134	AO8	G	660	665	Right-handed alpha

There are 30 sheets in PDB entry 8BBL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	138	140	first strand
Strand 2	A	262	267	anti-parallel
Strand 3	A	223	227	anti-parallel
Strand 4	A	234	236	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	273	275	first strand
Strand 2	A	609	611	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	305	307	first strand
Strand 2	A	386	392	parallel
Strand 3	A	455	457	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	310	311	first strand
Strand 2	A	314	315	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	138	140	first strand
Strand 2	B	262	264	anti-parallel
Strand 3	B	224	227	anti-parallel
Strand 4	B	234	235	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	274	275	first strand
Strand 2	B	607	611	parallel
Strand 3	B	551	552	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	278	279	first strand
Strand 2	B	305	308	parallel
Strand 3	B	386	389	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	310	311	first strand
Strand 2	B	314	315	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	453	455	first strand
Strand 2	B	505	508	parallel
Strand 3	B	529	530	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	138	140	first strand
Strand 2	C	262	264	anti-parallel
Strand 3	C	226	227	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	273	275	first strand
Strand 2	C	607	611	parallel
Strand 3	C	551	552	parallel
Strand 4	C	529	531	parallel
Strand 5	C	505	508	parallel
Strand 6	C	453	455	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	278	279	first strand
Strand 2	C	305	308	parallel
Strand 3	C	386	389	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	310	311	first strand
Strand 2	C	314	315	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	138	144	first strand
Strand 2	D	260	264	anti-parallel
Strand 3	D	226	227	anti-parallel

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There are 9 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	273	279	first strand
Strand 2	D	305	308	parallel
Strand 3	D	386	392	parallel
Strand 4	D	454	457	parallel
Strand 5	D	506	508	parallel
Strand 6	D	529	530	parallel
Strand 7	D	551	552	parallel
Strand 8	D	607	611	parallel
Strand 9	D	273	279	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	310	311	first strand
Strand 2	D	314	315	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	138	144	first strand
Strand 2	E	260	264	anti-parallel
Strand 3	E	226	228	anti-parallel
Strand 4	E	231	233	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	274	275	first strand
Strand 2	E	607	611	parallel
Strand 3	E	551	553	parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	278	279	first strand
Strand 2	E	305	308	parallel
Strand 3	E	386	389	parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	453	455	first strand
Strand 2	E	505	508	parallel
Strand 3	E	529	530	parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	136	140	first strand
Strand 2	F	262	266	anti-parallel
Strand 3	F	226	227	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	273	275	first strand
Strand 2	F	607	611	parallel
Strand 3	F	551	553	parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	278	279	first strand
Strand 2	F	305	308	parallel
Strand 3	F	386	392	parallel
Strand 4	F	453	457	parallel
Strand 5	F	505	508	parallel
Strand 6	F	529	530	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	310	311	first strand
Strand 2	F	314	315	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	138	140	first strand
Strand 2	H	262	264	anti-parallel
Strand 3	H	226	227	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	386	389	first strand
Strand 2	H	305	308	parallel
Strand 3	H	273	279	parallel
Strand 4	H	607	611	parallel
Strand 5	H	551	552	parallel
Strand 6	H	530	531	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	453	455	first strand
Strand 2	H	505	507	parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	136	139	first strand
Strand 2	G	263	266	anti-parallel
Strand 3	G	224	227	anti-parallel
Strand 4	G	234	235	anti-parallel

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There are 9 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	273	275	first strand
Strand 2	G	607	611	parallel
Strand 3	G	551	552	parallel
Strand 4	G	529	531	parallel
Strand 5	G	505	508	parallel
Strand 6	G	453	457	parallel
Strand 7	G	386	392	parallel
Strand 8	G	305	308	parallel
Strand 9	G	278	279	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	310	311	first strand
Strand 2	G	314	315	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8BBL

Analysis of interatomic Contacts of Structural Units in PDB entry:
8BBL