Analysis of interatomic Contacts of Structural Units in PDB entry:
8BBP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8BBP entry

There are 2 chains in PDB entry 8BBP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 21LEU 388
B
 ALA 20GLU 315
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 8BBP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
54 58Right-handed 310
Helix 2
AA2
A
115 122Right-handed 310
Helix 3
AA3
A
177 182Right-handed alpha
Helix 4
AA4
A
184 195Right-handed alpha
Helix 5
AA5
A
239 248Right-handed alpha
Helix 6
AA6
A
248 257Right-handed alpha
Helix 7
AA7
A
262 264Right-handed 310
Helix 8
AA8
A
272 285Right-handed alpha
Helix 9
AA9
A
314 325Right-handed alpha
Helix 10
AB1
A
341 355Right-handed alpha
Helix 11
AB2
A
369 381Right-handed alpha
Helix 12
AB3
A
382 384Right-handed 310
Helix 13
AB4
B
115 122Right-handed 310
Helix 14
AB5
B
177 182Right-handed alpha
Helix 15
AB6
B
184 195Right-handed alpha
Helix 16
AB7
B
239 248Right-handed alpha
Helix 17
AB8
B
248 257Right-handed alpha
Helix 18
AB9
B
262 264Right-handed 310
Helix 19
AC1
B
272 285Right-handed alpha
Helix 20
AC2
B
308 325Right-handed alpha
Helix 21
AC3
B
341 355Right-handed alpha
Helix 22
AC4
B
369 381Right-handed alpha
Helix 23
AC5
B
382 384Right-handed 310
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There are 7 sheets in PDB entry 8BBP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 27first strand
Strand 2
A
33 38anti-parallel
Strand 3
A
68 73anti-parallel
Strand 4
A
62 63anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 60first strand
Strand 2
A
45 49anti-parallel
Strand 3
A
79 87anti-parallel
Strand 4
A
90 92anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 60first strand
Strand 2
A
45 49anti-parallel
Strand 3
A
79 87anti-parallel
Strand 4
A
106 113anti-parallel
Strand 5
A
100 103anti-parallel
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There are 16 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
360 364first strand
Strand 2
A
330 336parallel
Strand 3
A
291 295parallel
Strand 4
A
266 271parallel
Strand 5
A
165 169parallel
Strand 6
A
202 205parallel
Strand 7
A
146 152anti-parallel
Strand 8
A
131 137anti-parallel
Strand 9
B
131 137anti-parallel
Strand 10
B
146 152anti-parallel
Strand 11
B
202 205anti-parallel
Strand 12
B
165 169parallel
Strand 13
B
266 271parallel
Strand 14
B
291 295parallel
Strand 15
B
330 336parallel
Strand 16
B
360 364parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 27first strand
Strand 2
B
33 38anti-parallel
Strand 3
B
68 73anti-parallel
Strand 4
B
62 63anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 60first strand
Strand 2
B
45 49anti-parallel
Strand 3
B
79 87anti-parallel
Strand 4
B
90 92anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 60first strand
Strand 2
B
45 49anti-parallel
Strand 3
B
79 87anti-parallel
Strand 4
B
106 113anti-parallel
Strand 5
B
100 103anti-parallel
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