Analysis of interatomic Contacts of Structural Units in PDB entry:
8BBQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8BBQ entry

There are 2 chains in PDB entry 8BBQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 34VAL 357
B
 SER 35GLU 355
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 8BBQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
45 47Right-handed 310
Helix 2
AA2
A
48 65Right-handed alpha
Helix 3
AA3
A
72 84Right-handed alpha
Helix 4
AA4
A
90 111Right-handed alpha
Helix 5
AA5
A
129 138Right-handed 310
Helix 6
AA6
A
147 166Right-handed alpha
Helix 7
AA7
A
167 177Right-handed alpha
Helix 8
AA8
A
181 192Right-handed alpha
Helix 9
AA9
A
212 220Right-handed alpha
Helix 10
AB1
A
220 229Right-handed alpha
Helix 11
AB2
A
232 238Right-handed alpha
Helix 12
AB3
A
251 256Right-handed alpha
Helix 13
AB4
A
256 266Right-handed alpha
Helix 14
AB5
A
267 271Right-handed 310
Helix 15
AB6
A
273 277Right-handed 310
Helix 16
AB7
A
278 301Right-handed alpha
Helix 17
AB8
A
310 317Right-handed alpha
Helix 18
AB9
A
335 340Right-handed 310
Helix 19
AC1
A
342 345Right-handed 310
Helix 20
AC2
B
45 47Right-handed 310
Helix 21
AC3
B
48 65Right-handed alpha
Helix 22
AC4
B
72 84Right-handed alpha
Helix 23
AC5
B
90 111Right-handed alpha
Helix 24
AC6
B
129 138Right-handed 310
Helix 25
AC7
B
147 165Right-handed alpha
Helix 26
AC8
B
167 177Right-handed alpha
Helix 27
AC9
B
181 192Right-handed alpha
Helix 28
AD1
B
212 220Right-handed alpha
Helix 29
AD2
B
220 229Right-handed alpha
Helix 30
AD3
B
232 238Right-handed alpha
Helix 31
AD4
B
251 256Right-handed alpha
Helix 32
AD5
B
256 266Right-handed alpha
Helix 33
AD6
B
267 271Right-handed 310
Helix 34
AD7
B
273 277Right-handed 310
Helix 35
AD8
B
278 301Right-handed alpha
Helix 36
AD9
B
310 317Right-handed alpha
Helix 37
AE1
B
335 340Right-handed 310
Helix 38
AE2
B
342 345Right-handed 310
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There are 2 sheets in PDB entry 8BBQ. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 40first strand
Strand 2
A
347 349parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 40first strand
Strand 2
B
347 349parallel
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