Analysis of interatomic Contacts of Structural Units in PDB entry:
8BBX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8BBX entry

There are 2 chains in PDB entry 8BBX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 43TYR 525
B
 ALA 42TYR 525
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 8BBX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
94 99Right-handed 310
Helix 2
AA2
A
102 112Right-handed alpha
Helix 3
AA3
A
135 140Right-handed 310
Helix 4
AA4
A
141 156Right-handed alpha
Helix 5
AA5
A
163 167Right-handed 310
Helix 6
AA6
A
179 192Right-handed alpha
Helix 7
AA7
A
213 215Right-handed 310
Helix 8
AA8
A
216 223Right-handed alpha
Helix 9
AA9
A
224 245Right-handed alpha
Helix 10
AB1
A
246 257Right-handed alpha
Helix 11
AB2
A
264 270Right-handed alpha
Helix 12
AB3
A
273 278Right-handed alpha
Helix 13
AB4
A
279 282Right-handed 310
Helix 14
AB5
A
289 299Right-handed alpha
Helix 15
AB6
A
315 331Right-handed alpha
Helix 16
AB7
A
335 340Right-handed 310
Helix 17
AB8
A
358 363Right-handed alpha
Helix 18
AB9
A
371 381Right-handed alpha
Helix 19
AC1
A
403 409Right-handed alpha
Helix 20
AC2
A
410 415Right-handed alpha
Helix 21
AC3
A
423 427Right-handed 310
Helix 22
AC4
A
430 439Right-handed alpha
Helix 23
AC5
A
440 446Right-handed 310
Helix 24
AC6
A
460 464Right-handed 310
Helix 25
AC7
A
496 503Right-handed alpha
Helix 26
AC8
A
503 523Right-handed alpha
Helix 27
AC9
B
57 60Right-handed 310
Helix 28
AD1
B
94 99Right-handed 310
Helix 29
AD2
B
102 112Right-handed alpha
Helix 30
AD3
B
135 140Right-handed 310
Helix 31
AD4
B
141 156Right-handed alpha
Helix 32
AD5
B
179 192Right-handed alpha
Helix 33
AD6
B
213 215Right-handed 310
Helix 34
AD7
B
216 223Right-handed alpha
Helix 35
AD8
B
224 244Right-handed alpha
Helix 36
AD9
B
246 256Right-handed alpha
Helix 37
AE1
B
264 270Right-handed alpha
Helix 38
AE2
B
273 278Right-handed alpha
Helix 39
AE3
B
279 282Right-handed 310
Helix 40
AE4
B
289 299Right-handed alpha
Helix 41
AE5
B
315 331Right-handed alpha
Helix 42
AE6
B
335 340Right-handed 310
Helix 43
AE7
B
358 363Right-handed alpha
Helix 44
AE8
B
371 381Right-handed alpha
Helix 45
AE9
B
403 409Right-handed alpha
Helix 46
AF1
B
410 415Right-handed alpha
Helix 47
AF2
B
423 427Right-handed 310
Helix 48
AF3
B
430 439Right-handed alpha
Helix 49
AF4
B
440 446Right-handed 310
Helix 50
AF5
B
460 464Right-handed 310
Helix 51
AF6
B
496 503Right-handed alpha
Helix 52
AF7
B
503 523Right-handed alpha
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There are 4 sheets in PDB entry 8BBX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 52first strand
Strand 2
A
62 70anti-parallel
Strand 3
A
114 118anti-parallel
Strand 4
A
81 84parallel
Strand 5
A
173 178parallel
Strand 6
A
198 202parallel
Strand 7
A
450 455parallel
Strand 8
A
483 486parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 211first strand
Strand 2
A
384 386parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 52first strand
Strand 2
B
62 70anti-parallel
Strand 3
B
114 118anti-parallel
Strand 4
B
81 84parallel
Strand 5
B
173 178parallel
Strand 6
B
198 202parallel
Strand 7
B
450 455parallel
Strand 8
B
483 486parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
209 211first strand
Strand 2
B
384 386parallel
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